View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_22 (Length: 292)
Name: NF8214_low_22
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 38336710 - 38336456
Alignment:
| Q |
20 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336710 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
38336611 |
T |
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| Q |
120 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336610 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
38336511 |
T |
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| Q |
220 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
274 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38336510 |
cttttaaaggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
38336456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 29638337 - 29638591
Alignment:
| Q |
20 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638337 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
29638436 |
T |
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| Q |
120 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29638437 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacatgtaaatgctccc |
29638536 |
T |
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| Q |
220 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29638537 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
29638591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 20418343 - 20418597
Alignment:
| Q |
20 |
atactgcactgtagacttgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
119 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418343 |
atactgcactgtagaattgtcttgtatcctagcttctttaatacatatcttaaacctatccaaacgactagctgacccacgaacatatcgaaccgcattc |
20418442 |
T |
|
| Q |
120 |
ctaattttggaaattgaagagtgcatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
219 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418443 |
ctaattttggaaattgaagaatacatgtcctttgacttcaacccatcacctacaacaaggttaagaatgtgggcacaacacctaacgtgtaaatgctccc |
20418542 |
T |
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| Q |
220 |
cttttaacggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
274 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20418543 |
cttataaaggatgtgaattccaatcctccatcctatttttcaggtaagagatagc |
20418597 |
T |
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