View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_25 (Length: 284)
Name: NF8214_low_25
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 980267 - 980489
Alignment:
| Q |
19 |
atctggtccgaactttctagaaggggatatcccaattcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatgga |
118 |
Q |
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| T |
980267 |
atctggtccgaactttctagaaggggatatcccaattcccaaacctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatgga |
980366 |
T |
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| Q |
119 |
ttagcatacattgttgaaaaggcactagactcagctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcc |
218 |
Q |
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| T |
980367 |
ttagcatacattgttgaaaaggcactagactcagctgcggatttttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcc |
980466 |
T |
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| Q |
219 |
tcaaaccaattaaccggggtttt |
241 |
Q |
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| T |
980467 |
tcaaaccaattaaccggggtttt |
980489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 63 - 271
Target Start/End: Original strand, 27146425 - 27146633
Alignment:
| Q |
63 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcagctgcggattt |
162 |
Q |
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| T |
27146425 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcaactgcggattt |
27146524 |
T |
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| Q |
163 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaccggggttttnnnnnnnnntagaagtagtca |
262 |
Q |
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| T |
27146525 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaacggggttttaaaaaaaattagaagtagtca |
27146624 |
T |
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| Q |
263 |
agctccttc |
271 |
Q |
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| T |
27146625 |
agctccttc |
27146633 |
T |
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