View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8214_low_26 (Length: 283)

Name: NF8214_low_26
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8214_low_26
NF8214_low_26
[»] chr2 (12 HSPs)
chr2 (106-196)||(38584090-38584183)
chr2 (45-196)||(1173476-1173630)
chr2 (239-277)||(38583997-38584035)
chr2 (106-164)||(32290582-32290644)
chr2 (226-274)||(32290799-32290848)
chr2 (125-181)||(38584136-38584195)
chr2 (222-277)||(8986370-8986425)
chr2 (222-283)||(32290724-32290786)
chr2 (222-272)||(38583934-38583983)
chr2 (239-283)||(8986500-8986545)
chr2 (32-92)||(1173491-1173551)
chr2 (114-154)||(20594018-20594058)
[»] chr7 (8 HSPs)
chr7 (45-153)||(11828578-11828687)
chr7 (106-196)||(21813840-21813933)
chr7 (106-187)||(11828572-11828656)
chr7 (222-277)||(46963680-46963735)
chr7 (106-164)||(11828629-11828687)
chr7 (109-220)||(46963783-46963894)
chr7 (124-164)||(21813827-21813867)
chr7 (110-150)||(24487088-24487128)
[»] chr5 (8 HSPs)
chr5 (106-196)||(9511798-9511891)
chr5 (106-220)||(11335355-11335469)
chr5 (55-150)||(9511777-9511873)
chr5 (222-274)||(9512039-9512091)
chr5 (222-274)||(24137189-24137241)
chr5 (222-267)||(24137126-24137171)
chr5 (83-153)||(24137043-24137113)
chr5 (109-149)||(24136915-24136955)
[»] chr3 (9 HSPs)
chr3 (45-150)||(2593555-2593660)
chr3 (114-220)||(42530734-42530840)
chr3 (222-272)||(42530815-42530865)
chr3 (33-98)||(2593546-2593611)
chr3 (222-283)||(42530892-42530954)
chr3 (106-202)||(50295578-50295677)
chr3 (109-196)||(46692052-46692141)
chr3 (106-165)||(50295547-50295606)
chr3 (227-274)||(46691907-46691955)
[»] chr1 (8 HSPs)
chr1 (106-167)||(19825103-19825164)
chr1 (106-148)||(19825091-19825133)
chr1 (107-184)||(2072366-2072446)
chr1 (107-184)||(2075896-2075976)
chr1 (34-117)||(19825091-19825175)
chr1 (106-153)||(15630044-15630091)
chr1 (194-264)||(12177102-12177181)
chr1 (168-283)||(15629844-15629965)
[»] chr6 (5 HSPs)
chr6 (222-283)||(9291132-9291193)
chr6 (222-283)||(22860813-22860876)
chr6 (222-277)||(22860922-22860977)
chr6 (113-204)||(21862238-21862331)
chr6 (239-283)||(22860760-22860804)
[»] chr4 (9 HSPs)
chr4 (45-153)||(54147672-54147781)
chr4 (222-283)||(16871049-16871112)
chr4 (190-268)||(24225657-24225742)
chr4 (109-152)||(42265449-42265492)
chr4 (222-272)||(24225662-24225712)
chr4 (239-283)||(16871031-16871076)
chr4 (222-272)||(16871120-16871172)
chr4 (168-220)||(16870802-16870853)
chr4 (227-271)||(24225633-24225677)


Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 38584183 - 38584090
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttt 196  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||| ||| ||||| |||||||    
T  38584183 gtgctcacaatttggtagtttggtgagttaagtgctcacaatttggttgtttggtgagttaaatgctcacaatttgattttttctccccctttt 38584090  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 196
Target Start/End: Complemental strand, 1173630 - 1173476
Alignment:
Q  45 gtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggttctttggggagt-ttgtgctcacaatttggttatttggtgagttaagtgctca 143  Q
    ||||||| ||||||||||||||||||| | ||| ||   | ||||||| ||||| |||| | |||||||||  ||| || ||||||||| |||| |||||    
T  1173630 gtgctcataatttgtttgtttggtgagtcgagtactcatattttggttgtttggtgagtctagtgctcacatgttgtttgtttggtgag-taagcgctca 1173532  T
Q  144 caatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttt 196  Q
    || |||||||| |||||||||  |   ||||||||||||||||||||| |||||||    
T  1173531 cactttggttgtttggtgagtctagtgctcacaatttggtttcttctcgccctttt 1173476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 38584035 - 38583997
Alignment:
Q  239 attgcacttcttccccttttgattcttctgattgcattg 277  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  38584035 attgcacttctcccccttttgattcttctgattgcattg 38583997  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 32290582 - 32290644
Alignment:
Q  106 gtgctcacaatttggttattt----ggtgagttaagtgctcacaatttggttgcttggtgagt 164  Q
    |||||||||||||||||||||    |||| || |||||||||||||||||||| |||||||||    
T  32290582 gtgctcacaatttggttatttttttggtgggtcaagtgctcacaatttggttgtttggtgagt 32290644  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 32290799 - 32290848
Alignment:
Q  226 gttcttctaattgattgcacttct-tccccttttgattcttctgattgca 274  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||||    
T  32290799 gttcttctgattgattgcatttctctccccttttgattcttctgattgca 32290848  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 38584195 - 38584136
Alignment:
Q  125 ttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtt 181  Q
    ||||||||| |||||||||||||||||| | ||||||||||||   ||||||||||||||    
T  38584195 ttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaatttggtt 38584136  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 8986370 - 8986425
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgcattg 277  Q
    |||| ||||||| |||||||||| |||| ||||| ||| |||||||||||||||||    
T  8986370 tttgattcttctgattgattgcatttctccccctattggttcttctgattgcattg 8986425  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 32290724 - 32290786
Alignment:
Q  222 tttggttcttctaattg-attgcacttcttccccttttgattcttctgattgcattgtacttc 283  Q
    |||||| ||||| |||| ||||||||||| ||||||||| |||||||||||| |||| |||||    
T  32290724 tttggtccttctgattgcattgcacttctcccccttttggttcttctgattgtattgcacttc 32290786  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 38583983 - 38583934
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattg 272  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||||||||    
T  38583983 tttgattcttctgattgattgcacttc-tccccctttgattcttctgattg 38583934  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 8986500 - 8986545
Alignment:
Q  239 attgcacttcttcccc-ttttgattcttctgattgcattgtacttc 283  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  8986500 attgcacttctccccccttttgattcttctgattgcattgcacttc 8986545  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 1173551 - 1173491
Alignment:
Q  32 gtttggtgagtttgtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggtt 92  Q
    |||||||||||  | ||||||| |||| |||||||||||| ||||||||  ||||||||||    
T  1173551 gtttggtgagtaagcgctcacactttggttgtttggtgagtctagtgctcacaatttggtt 1173491  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 20594058 - 20594018
Alignment:
Q  114 aatttggttatttggtgagttaagtgctcacaatttggttg 154  Q
    ||||||||| |||| ||||||||||| ||||||||||||||    
T  20594058 aatttggttgtttgatgagttaagtgttcacaatttggttg 20594018  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 11828687 - 11828578
Alignment:
Q  45 gtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggttctttggggagtttg-tgctcacaatttggttatttggtgagttaagtgctca 143  Q
    |||||||||||||||| |||||||| | | ||||||  |||||||||| | ||| ||||  | |||||||| ||||||| ||||||||||||||| ||||    
T  11828687 gtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactca 11828588  T
Q  144 caatttggtt 153  Q
    ||||||||||    
T  11828587 caatttggtt 11828578  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 21813840 - 21813933
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtta---actcacaatttggtttcttctctccctttt 196  Q
    ||||||||| ||||||| ||||||||||  |||||||||||||||||||||||||||  ||   || ||||||||||||| ||||| |||||||    
T  21813840 gtgctcacactttggttgtttggtgagtcgagtgctcacaatttggttgcttggtgaaataagtacccacaatttggttttttctccccctttt 21813933  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 11828656 - 11828572
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtta---actcacaatttggtttcttct 187  Q
    ||||||||||||||||| | ||||||||   ||||||||| |||||||| |||||||||||   |||||||||||||||||||||    
T  11828656 gtgctcacaatttggttgtctggtgagtcgggtgctcacattttggttgtttggtgagttaagtactcacaatttggtttcttct 11828572  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 46963735 - 46963680
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgcattg 277  Q
    |||| ||||||| |||||||||| |||| ||||| ||| |||||||||||||||||    
T  46963735 tttgattcttctgattgattgcatttctccccctattggttcttctgattgcattg 46963680  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 11828687 - 11828629
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagt 164  Q
    |||||||||||||| |  ||||||| || ||||||||||||||||||||  ||||||||    
T  11828687 gtgctcacaatttgttagtttggtgggtcaagtgctcacaatttggttgtctggtgagt 11828629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 46963894 - 46963783
Alignment:
Q  109 ctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgag--ttaactcacaatttggtttcttctctccctttttgattcttat 206  Q
    |||| |||||| || ||||||||||  | | |||||| |||||||| ||||||||  |   ||||||||||||||||||||| |||||||| |||||| |    
T  46963894 ctcataatttgcttgtttggtgagtcgatttctcacactttggttgtttggtgagcatgtgctcacaatttggtttcttctc-cccttttt-attcttct 46963797  T
Q  207 gattgattgcactt 220  Q
     |||||||||||||    
T  46963796 cattgattgcactt 46963783  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 21813827 - 21813867
Alignment:
Q  124 tttggtgagttaagtgctcacaatttggttgcttggtgagt 164  Q
    |||||||||| ||||||||||| |||||||| |||||||||    
T  21813827 tttggtgagtcaagtgctcacactttggttgtttggtgagt 21813867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 24487128 - 24487088
Alignment:
Q  110 tcacaatttggttatttggtgagttaagtgctcacaatttg 150  Q
    ||||||||||||| |||||||||| |||| |||||||||||    
T  24487128 tcacaatttggttgtttggtgagtcaagttctcacaatttg 24487088  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 9511798 - 9511891
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtta---actcacaatttggtttcttctctccctttt 196  Q
    ||||||||| || |||| ||||||||||  ||||||||||||||||||| |||||||||||   |||||||||||| |||||| || |||||||    
T  9511798 gtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttgatttcttatccccctttt 9511891  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 11335469 - 11335355
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttttgattc 202  Q
    |||||||||||||| || ||||||| |  |||| |||||| |||||||| |||||||||  |   ||||||||||||||||||||| ||| |||||||||    
T  11335469 gtgctcacaatttgtttgtttggtggg--aagtactcacactttggttgtttggtgagtcgaatgctcacaatttggtttcttctc-ccccttttgattc 11335373  T
Q  203 ttatgattgattgcactt 220  Q
    || ||||||||| |||||    
T  11335372 ttttgattgattacactt 11335355  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 9511777 - 9511873
Alignment:
Q  55 tttgtttgtttggtgagcctagtgcttgcaatttggttctttggggagt-ttgtgctcacaatttggttatttggtgagttaagtgctcacaatttg 150  Q
    ||||||||||||||||| | ||||||  || || |||| ||||| ||||   ||||||||||||||||| ||||||||||||| | |||||||||||    
T  9511777 tttgtttgtttggtgagtcgagtgctcacacttcggttgtttggtgagtcgagtgctcacaatttggttgtttggtgagttaaatactcacaatttg 9511873  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 9512039 - 9512091
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgca 274  Q
    |||||||||||| |||||||||| |||| ||||||||||||||| ||||||||    
T  9512039 tttggttcttctcattgattgcatttctcccccttttgattcttttgattgca 9512091  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 24137189 - 24137241
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgca 274  Q
    |||||||||||| |||||||| | |||| ||||||||||||||||||||||||    
T  24137189 tttggttcttctgattgattgtatttctcccccttttgattcttctgattgca 24137241  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 24137126 - 24137171
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttct 267  Q
    ||||||||||||||| |||||||||||| ||||||||| |||||||    
T  24137126 tttggttcttctaatagattgcacttctcccccttttggttcttct 24137171  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 24137043 - 24137113
Alignment:
Q  83 caatttggttctttggggagttt-gtgctcacaatttggttatttggtgagttaagtgctcacaatttggtt 153  Q
    |||||||||| ||||| |||| | || |||||| ||||||| ||||||||||| ||||||||||||||||||    
T  24137043 caatttggttgtttggtgagtctagttctcaca-tttggttgtttggtgagttgagtgctcacaatttggtt 24137113  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 24136915 - 24136955
Alignment:
Q  109 ctcacaatttggttatttggtgagttaagtgctcacaattt 149  Q
    |||||||||||||| ||||||||||  ||||||||||||||    
T  24136915 ctcacaatttggttgtttggtgagtcgagtgctcacaattt 24136955  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 2593660 - 2593555
Alignment:
Q  45 gtgctcacaatttgtttgtttggtga-gcctagtgcttgcaatttggttctttggggagtttgtgctcacaatttggttatttggtgagttaagtgctca 143  Q
    |||||||||||||| |||||||| || | | ||||||  ||||||| |||||||| ||||||||||||| |||||| || |||| ||||| |||||||||    
T  2593660 gtgctcacaatttggttgtttggggaagtcaagtgctcacaatttg-ttctttggtgagtttgtgctcataatttgtttgtttgatgagtcaagtgctca 2593562  T
Q  144 caatttg 150  Q
    |||||||    
T  2593561 caatttg 2593555  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 220
Target Start/End: Original strand, 42530734 - 42530840
Alignment:
Q  114 aatttggttatttggtgagttaagtgctcacaatttggttgcttggtgag--ttaactcacaatttggtttcttctctccctttttgattcttatgattg 211  Q
    ||||||||| ||||||||||  ||| |||||| |||||||| ||||||||  |   ||||||||||||||||||||| ||  ||||||||||| ||||||    
T  42530734 aatttggttgtttggtgagtcgagttctcacactttggttgtttggtgagcgtgtgctcacaatttggtttcttctcccc--ttttgattcttctgattg 42530831  T
Q  212 attgcactt 220  Q
    |||||||||    
T  42530832 attgcactt 42530840  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 42530815 - 42530865
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattg 272  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  42530815 tttgattcttctgattgattgcacttcttccccttttgattcttctgattg 42530865  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 2593611 - 2593546
Alignment:
Q  33 tttggtgagtttgtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggttctttgg 98  Q
    ||||||||||||||||||| |||||||||||||| |||| | ||||||  ||||||| ||||||||    
T  2593611 tttggtgagtttgtgctcataatttgtttgtttgatgagtcaagtgctcacaatttgtttctttgg 2593546  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 42530892 - 42530954
Alignment:
Q  222 tttggttcttctaattgattgcacttct-tccccttttgattcttctgattgcattgtacttc 283  Q
    |||||||||||| |||||||||||||||  |||||||||||| ||| |||||||||| |||||    
T  42530892 tttggttcttctgattgattgcacttctccccccttttgattattcagattgcattgcacttc 42530954  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 50295578 - 50295677
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttttgattc 202  Q
    ||||||||| || |||| ||||||||||| ||| |||  | |||| ||| ||||||||||||   |||| |||||||||||||||| ||| |||||||||    
T  50295578 gtgctcacacttgggttgtttggtgagttgagttctcgtactttgattgtttggtgagttaagtactcataatttggtttcttctccccccttttgattc 50295677  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 46692141 - 46692052
Alignment:
Q  109 ctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttt 196  Q
    |||||||||||||| ||||||||||  | | |||||| ||| |||| |||||||||  |   |||||||||||||||||||||||||||||    
T  46692141 ctcacaatttggttgtttggtgagtctaattctcaca-tttagttgtttggtgagtcgagtgctcacaatttggtttcttctctccctttt 46692052  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 50295547 - 50295606
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtt 165  Q
    ||||||||||||||||| ||| ||||||  |||||||||| || ||||| ||||||||||    
T  50295547 gtgctcacaatttggttgtttcgtgagtcgagtgctcacacttgggttgtttggtgagtt 50295606  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 274
Target Start/End: Complemental strand, 46691955 - 46691907
Alignment:
Q  227 ttcttctaattg-attgcacttcttccccttttgattcttctgattgca 274  Q
    ||||||| |||| ||||||||| |||||||||| |||||||||||||||    
T  46691955 ttcttctgattgcattgcactttttccccttttaattcttctgattgca 46691907  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 19825164 - 19825103
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa 167  Q
    ||||||||||||||||| ||||| ||||  ||||||||||||||||||| ||||||||||||    
T  19825164 gtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaa 19825103  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 19825133 - 19825091
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatt 148  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  19825133 gtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 2072446 - 2072366
Alignment:
Q  107 tgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtta---actcacaatttggtttct 184  Q
    ||||||||||||| || |||| |||||  |||||||| | |||||||| |||||||||||   ||||||||||||||||||    
T  2072446 tgctcacaatttgattgtttgatgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttct 2072366  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 2075976 - 2075896
Alignment:
Q  107 tgctcacaatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagtta---actcacaatttggtttct 184  Q
    |||||||||||||||| ||||  ||||  |||||||| | |||||||| |||||||||||   ||||||||||||||||||    
T  2075976 tgctcacaatttggttgtttgacgagtcgagtgctcatactttggttgtttggtgagttatgtactcacaatttggtttct 2075896  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 19825175 - 19825091
Alignment:
Q  34 ttggtgagtttgtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggttctttggggagtt-tgtgctcacaatt 117  Q
    |||||||||  |||||||||||||| |||||||| ||| | ||||||  |||||||||| ||||| |||||  ||||||||||||    
T  19825175 ttggtgagtaagtgctcacaatttggttgtttggcgagtcgagtgctcacaatttggttgtttggtgagttaagtgctcacaatt 19825091  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 15630091 - 15630044
Alignment:
Q  106 gtgctcacaatttggttatttggtgagttaagtgctcacaatttggtt 153  Q
    ||||||||| ||||||| ||||||||||  ||||||||||||||||||    
T  15630091 gtgctcacactttggttgtttggtgagtcgagtgctcacaatttggtt 15630044  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 12177181 - 12177102
Alignment:
Q  194 ttttgattcttatgattgattgcactt--------atttggttcttctaattgattgcacttcttccc-cttttgattct 264  Q
    |||||||||||||||||||||||||||        ||||  ||||||| ||||||||||||||||||| |||||||||||    
T  12177181 ttttgattcttatgattgattgcacttatgtccccattttattcttctgattgattgcacttcttcccacttttgattct 12177102  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 283
Target Start/End: Complemental strand, 15629965 - 15629844
Alignment:
Q  168 ctcacaatttggtttcttctctccctttttgattcttatgattg-attgcacttat-------ttggttcttctaattgattgcacttcttccccttttg 259  Q
    ||||||||||||||||||||| ||  || |||||||| |||||| ||||||||| |       || |||||| | ||||||||||||||| || | ||||    
T  15629965 ctcacaatttggtttcttctcccc--ttatgattcttctgattgcattgcacttctccccctttttgttcttttgattgattgcacttctccctcctttg 15629868  T
Q  260 attcttctgattgcattgtacttc 283  Q
    |||||| ||||||||||| |||||    
T  15629867 attcttttgattgcattgcacttc 15629844  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 9291193 - 9291132
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgcattgtacttc 283  Q
    |||||||||||| ||||||||||||||| || | |||||||||| ||||||||||| |||||    
T  9291193 tttggttcttctgattgattgcacttctccctcctttgattcttttgattgcattgcacttc 9291132  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 22860813 - 22860876
Alignment:
Q  222 tttggttcttctaattgattgcacttct-tcccc-ttttgattcttctgattgcattgtacttc 283  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||| |||||    
T  22860813 tttggttcttctgattgattgcacttctctcccctttttgattcttctgattccattgcacttc 22860876  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 22860922 - 22860977
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattgcattg 277  Q
    |||||||||||  |||||||||| |||| ||||||||| |||||||||||||||||    
T  22860922 tttggttcttccgattgattgcatttctcccccttttggttcttctgattgcattg 22860977  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 21862238 - 21862331
Alignment:
Q  113 caatttggttatttggtgagttaagtgctcacaatttggttgcttggtgagttaa---ctcacaatttggtttcttctctccctttttgattctt 204  Q
    |||||||||| ||||||||||  ||  |||||| |||||||| |||||||||  |   ||||||||||||||||||||| ||| |||||||||||    
T  21862238 caatttggttgtttggtgagtctagctctcaca-tttggttgtttggtgagtcgagtgctcacaatttggtttcttctcccccattttgattctt 21862331  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 22860760 - 22860804
Alignment:
Q  239 attgcacttcttccccttttgattcttctgattgcattgtacttc 283  Q
    |||||||||||  |||||||||||||||||||||||||| |||||    
T  22860760 attgcacttctctcccttttgattcttctgattgcattgcacttc 22860804  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 54147672 - 54147781
Alignment:
Q  45 gtgctcacaatttgtttgtttggtgagcctagtgcttgcaatttggttctttggggagttt-gtgctcacaatttggttatttggtgagttaagtgctca 143  Q
    ||||||| ||||||||||||||||||| |  |||||  || ||| ||| ||||| |||| | || |||||| ||||||| |||||||||||  |||||||    
T  54147672 gtgctcataatttgtttgtttggtgagtcaggtgctcacactttagttgtttggtgagtctagttctcacattttggttgtttggtgagtttggtgctca 54147771  T
Q  144 caatttggtt 153  Q
    ||||||||||    
T  54147772 caatttggtt 54147781  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 16871049 - 16871112
Alignment:
Q  222 tttggttcttctaattg-attgcacttcttcccc-ttttgattcttctgattgcattgtacttc 283  Q
    |||| ||||||| |||| ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  16871049 tttgattcttctgattgcattgcacttctccccccttttgattcttctgattgcattgcacttc 16871112  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 24225657 - 24225742
Alignment:
Q  190 ccctttttgattcttatgattgattgcacttatt-------tggttcttctaattgattgcacttcttccccttttgattcttctg 268  Q
    ||||||||||||||| ||||| ||||||||| ||       || ||||||| |||||||||| |||| ||||||||||||||||||    
T  24225657 ccctttttgattcttctgattcattgcactttttcctcttttgattcttctgattgattgcatttctcccccttttgattcttctg 24225742  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 42265449 - 42265492
Alignment:
Q  109 ctcacaatttggttatttggtgagttaagtgctcacaatttggt 152  Q
    |||||||||||||| |||||||| | ||||||||||||||||||    
T  42265449 ctcacaatttggttgtttggtgattcaagtgctcacaatttggt 42265492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 24225662 - 24225712
Alignment:
Q  222 tttggttcttctaattgattgcacttcttccccttttgattcttctgattg 272  Q
    |||| ||||||| ||| ||||||||| |||| |||||||||||||||||||    
T  24225662 tttgattcttctgattcattgcactttttcctcttttgattcttctgattg 24225712  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 16871031 - 16871076
Alignment:
Q  239 attgcacttcttcccc-ttttgattcttctgattgcattgtacttc 283  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  16871031 attgcacttctccccccttttgattcttctgattgcattgcacttc 16871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 16871120 - 16871172
Alignment:
Q  222 tttggttcttctaattgattgcacttcttcccc--ttttgattcttctgattg 272  Q
    |||||||||||| ||||||||||||||| ||||  ||||||||| ||||||||    
T  16871120 tttggttcttctgattgattgcacttctcccccttttttgattcgtctgattg 16871172  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 16870802 - 16870853
Alignment:
Q  168 ctcacaatttggtttcttctctccctttttgattcttatgattgattgcactt 220  Q
    |||| |||||||||||||||| |||||||| |||||| | |||||||||||||    
T  16870802 ctcataatttggtttcttctc-cccttttttattcttctcattgattgcactt 16870853  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 24225633 - 24225677
Alignment:
Q  227 ttcttctaattgattgcacttcttccccttttgattcttctgatt 271  Q
    ||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  24225633 ttcttctgattcattgcacttctcccctttttgattcttctgatt 24225677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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