View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8214_low_28 (Length: 257)

Name: NF8214_low_28
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8214_low_28
NF8214_low_28
[»] chr6 (4 HSPs)
chr6 (30-194)||(2433081-2433250)
chr6 (44-168)||(2677096-2677221)
chr6 (214-254)||(2213321-2213361)
chr6 (220-256)||(10278475-10278511)
[»] chr8 (7 HSPs)
chr8 (214-257)||(45396585-45396628)
chr8 (224-254)||(5728562-5728592)
chr8 (220-254)||(44019573-44019607)
chr8 (223-256)||(11709008-11709041)
chr8 (215-256)||(21557455-21557496)
chr8 (217-257)||(19778086-19778126)
chr8 (220-256)||(44602619-44602655)
[»] chr7 (3 HSPs)
chr7 (214-257)||(48527211-48527254)
chr7 (212-257)||(46987107-46987152)
chr7 (220-256)||(33610928-33610964)
[»] chr2 (8 HSPs)
chr2 (214-256)||(41778941-41778983)
chr2 (218-257)||(4056811-4056850)
chr2 (214-256)||(20455913-20455955)
chr2 (223-257)||(40799600-40799634)
chr2 (220-257)||(12124705-12124742)
chr2 (212-257)||(24393266-24393311)
chr2 (212-257)||(28771603-28771648)
chr2 (220-256)||(33064008-33064044)
[»] chr5 (9 HSPs)
chr5 (220-257)||(32806380-32806417)
chr5 (214-254)||(18278256-18278296)
chr5 (212-255)||(35109423-35109466)
chr5 (214-256)||(17046356-17046397)
chr5 (214-256)||(28207154-28207196)
chr5 (220-257)||(8544992-8545029)
chr5 (212-257)||(16531270-16531315)
chr5 (212-252)||(11017202-11017242)
chr5 (214-254)||(32339759-32339799)
[»] chr4 (5 HSPs)
chr4 (216-257)||(25978338-25978379)
chr4 (215-257)||(19908713-19908755)
chr4 (212-257)||(29910482-29910527)
chr4 (214-255)||(42316821-42316862)
chr4 (220-256)||(2649736-2649772)
[»] chr1 (6 HSPs)
chr1 (212-257)||(38448861-38448906)
chr1 (212-257)||(1408456-1408501)
chr1 (215-256)||(4302474-4302515)
chr1 (212-257)||(6000138-6000183)
chr1 (220-257)||(9639820-9639857)
chr1 (212-257)||(47528442-47528487)
[»] scaffold0026 (1 HSPs)
scaffold0026 (214-257)||(75346-75389)
[»] chr3 (5 HSPs)
chr3 (214-257)||(8113559-8113602)
chr3 (212-252)||(14771357-14771397)
chr3 (212-256)||(19468473-19468517)
chr3 (215-255)||(46226023-46226063)
chr3 (212-252)||(51614235-51614275)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 2433081 - 2433250
Alignment:
Q  30 attattctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggttagtgctaattgcttttgtcattagtatgctattaaccaa 129  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2433081 attatgctattcagtattaaccaaatataatagaattttcctaggatttgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaa 2433180  T
Q  130 atatgagtaattatgtggaatttcctaggatatgatac-----ttaggttagtgctagcttgttttgtta 194  Q
    ||||||||| ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  2433181 atatgagtagttatgtggaatttcctaggatatgatacttaggttaggttagtgctagcttgttttgtta 2433250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 2677221 - 2677096
Alignment:
Q  44 tattaaccaaatataatagaattttcctaggatttgatacttgggttagtgctaattgcttttgtcattagtatgctattaaccaaatatgagtaattat 143  Q
    |||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  2677221 tattaatcaaatataatagaattttcgtaagatatgatacttgggttagtgctaattgcttttgtcattaatatgctattaaccaaatatgagtaattaa 2677122  T
Q  144 gtggaa-tttcctaggatatgatact 168  Q
    |||||| ||||||  |||||||||||    
T  2677121 gtggaattttccttagatatgatact 2677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 2213361 - 2213321
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgt 254  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  2213361 ccgggattctaacttcggaccttgcatatattatgcattgt 2213321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 10278511 - 10278475
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||||| || |||||||||||||||||||||||    
T  10278511 ttcgaacttcagatcttgcatatattatgcattgtcc 10278475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 45396628 - 45396585
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  45396628 ccgggattcgaacttcagaccttgcatatattatgcattgtcct 45396585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 5728592 - 5728562
Alignment:
Q  224 aacttcggagcttgcatatattatgcattgt 254  Q
    |||||||||||||||||||||||||||||||    
T  5728592 aacttcggagcttgcatatattatgcattgt 5728562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 44019607 - 44019573
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgt 254  Q
    ||||||||||||| |||||||||||||||||||||    
T  44019607 ttcgaacttcggaccttgcatatattatgcattgt 44019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 11709041 - 11709008
Alignment:
Q  223 gaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||||| |||||||||||||||||||||||    
T  11709041 gaacttcggaccttgcatatattatgcattgtcc 11709008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 21557496 - 21557455
Alignment:
Q  215 cgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||||||| ||||| ||| |||||||||||||||||||    
T  21557496 cgggattcgaacctcggaccttacatatattatgcattgtcc 21557455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 19778126 - 19778086
Alignment:
Q  217 ggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||||||  |||| ||||||||||||||||||||||||    
T  19778126 ggattcgaaccccggaccttgcatatattatgcattgtcct 19778086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 44602655 - 44602619
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||| |||| |||||||||||||||||||||||    
T  44602655 ttcgaactccggaccttgcatatattatgcattgtcc 44602619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 48527254 - 48527211
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  48527254 ccgggattcgaactccggaccttgcatatattatgcattgtcct 48527211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 46987152 - 46987107
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  46987152 gtccggggttcgaaccccggaccttgcatatattatgcattgtcct 46987107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 33610928 - 33610964
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||| |||| |||||||||||||||||||||||    
T  33610928 ttcgaactccggaccttgcatatattatgcattgtcc 33610964  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 41778941 - 41778983
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  41778941 ccgggattcgaacctcggaccttgcatatattatgcattgtcc 41778983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 257
Target Start/End: Complemental strand, 4056850 - 4056811
Alignment:
Q  218 gattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  4056850 gattcgaactccggaccttgcatatattatgcattgtcct 4056811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 20455955 - 20455913
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||||||||  |||| |||||||||||||||||||||||    
T  20455955 ccgggattcgaaccccggaccttgcatatattatgcattgtcc 20455913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 257
Target Start/End: Original strand, 40799600 - 40799634
Alignment:
Q  223 gaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||| ||||||||||||||||||||||||    
T  40799600 gaacttcggaacttgcatatattatgcattgtcct 40799634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 12124742 - 12124705
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  12124742 ttcgaactccggaccttgcatatattatgcattgtcct 12124705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 24393311 - 24393266
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||| ||||||| || || ||||||||||||||||||||||||    
T  24393311 gtccggggttcgaacctcagaccttgcatatattatgcattgtcct 24393266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 28771648 - 28771603
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||| |||||||  |||| ||||||||||||||||||||||||    
T  28771648 gtccggggttcgaaccgcggatcttgcatatattatgcattgtcct 28771603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 33064044 - 33064008
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||| |||| |||||||||||||||||||||||    
T  33064044 ttcgaactccggaccttgcatatattatgcattgtcc 33064008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 32806417 - 32806380
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32806417 ttcgaacttcggaccttgcatatattatgcattgtcct 32806380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 18278256 - 18278296
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgt 254  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  18278256 ccgggattcgaatttcggaccttgcatatattatgcattgt 18278296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 35109466 - 35109423
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtc 255  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||    
T  35109466 gtccgggattcgaacctcggaccttgcatatattatgtattgtc 35109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 17046397 - 17046356
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  17046397 ccgggattcgaact-cggatcttgcatatattatgcattgtcc 17046356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 28207196 - 28207154
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||    
T  28207196 ccgggattcgaacctcggaccttgcatattttatgcattgtcc 28207154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 8544992 - 8545029
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  8544992 ttcgaactccggaccttgcatatattatgcattgtcct 8545029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 16531270 - 16531315
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||| |||||||||  ||| ||||||||||||||||||||||||    
T  16531270 gtccggaattcgaactatggaccttgcatatattatgcattgtcct 16531315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 11017242 - 11017202
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcatt 252  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  11017242 gtccgggattcgaacctcagaccttgcatatattatgcatt 11017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 32339799 - 32339759
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgt 254  Q
    |||||||||||||  |||| |||||||||||||||||||||    
T  32339799 ccgggattcgaaccccggaccttgcatatattatgcattgt 32339759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 25978379 - 25978338
Alignment:
Q  216 gggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  25978379 gggattcgaacctcggaccttgcatatattatgcattgtcct 25978338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 19908755 - 19908713
Alignment:
Q  215 cgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||    
T  19908755 cggggttcgaacctcggaccttgcatatattatgcattgtcct 19908713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 29910527 - 29910482
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||    
T  29910527 gtccggaatttgaacttcagatcttgcatatattatgcattgtcct 29910482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 42316821 - 42316862
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtc 255  Q
    ||||||||||||| ||||| ||||||||||||||||| ||||    
T  42316821 ccgggattcgaacctcggaccttgcatatattatgcactgtc 42316862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 2649736 - 2649772
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||||||| |||| |||||||||||||||||||||||    
T  2649736 ttcgaactccggaccttgcatatattatgcattgtcc 2649772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 38448861 - 38448906
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||||||||  |||| ||||||||||||||||||||||||    
T  38448861 gtccgggattcgaaccccggaccttgcatatattatgcattgtcct 38448906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 1408501 - 1408456
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||| |||||||||||| |  |||||||||||||||||||||||    
T  1408501 gtccggaattcgaacttcgaactttgcatatattatgcattgtcct 1408456  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 4302515 - 4302474
Alignment:
Q  215 cgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    ||||||| ||||| |||| |||||||||||||||||||||||    
T  4302515 cgggatttgaactccggatcttgcatatattatgcattgtcc 4302474  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 6000138 - 6000183
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||| || |||| ||||| ||||||||||||||||||||||||    
T  6000138 gtccggggtttgaacctcggaccttgcatatattatgcattgtcct 6000183  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 9639820 - 9639857
Alignment:
Q  220 ttcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  9639820 ttcgaactccggaccttgcatatattatgcattgtcct 9639857  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 47528442 - 47528487
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||||    
T  47528442 gtccggggttcgaacctcggaccttgcgtatattatgcattgtcct 47528487  T

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Target: scaffold0026 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 75389 - 75346
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||||||  |||| ||||||||||||||||||||||||    
T  75389 ccgggattcgaaccccggaccttgcatatattatgcattgtcct 75346  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 8113559 - 8113602
Alignment:
Q  214 ccgggattcgaacttcggagcttgcatatattatgcattgtcct 257  Q
    |||||||||||||  |||| ||||||||||||||||||||||||    
T  8113559 ccgggattcgaaccgcggatcttgcatatattatgcattgtcct 8113602  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 14771397 - 14771357
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcatt 252  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  14771397 gtccgggattcgaacctcagaccttgcatatattatgcatt 14771357  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 19468517 - 19468473
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcattgtcc 256  Q
    |||| ||||||||||  |||| |||||||||||||||||||||||    
T  19468517 gtcccggattcgaaccacggaccttgcatatattatgcattgtcc 19468473  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 46226023 - 46226063
Alignment:
Q  215 cgggattcgaacttcggagcttgcatatattatgcattgtc 255  Q
    |||| |||||||| |||| ||||||||||||||||||||||    
T  46226023 cggggttcgaactccggaccttgcatatattatgcattgtc 46226063  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 51614275 - 51614235
Alignment:
Q  212 gtccgggattcgaacttcggagcttgcatatattatgcatt 252  Q
    ||||||||||||||| ||||| |||||||||||| ||||||    
T  51614275 gtccgggattcgaacctcggaccttgcatatattttgcatt 51614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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