View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_29 (Length: 254)
Name: NF8214_low_29
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 23052960 - 23052721
Alignment:
| Q |
1 |
acacaagtggtgatttattaggggaccattccaaaactgcataaaacttttatcatc-----aggtgattttatacatggtgatggaatgagatgagaat |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23052960 |
acacaagtggtgatttattaggggaccattccaaaactgcataaaacttttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaat |
23052861 |
T |
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| Q |
96 |
caattagatgttaattaatcataaaatcaaaataaatttgttatgagatttatcagaaccaacattaatctgtgatgcaggagagatggatttacttttt |
195 |
Q |
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| T |
23052860 |
caattagatgttaattaatcataaaatcaaaataaatttgttatgagatttatcagaaccaacattaatatgtgatgcaggagagatggatttacttttt |
23052761 |
T |
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| Q |
196 |
caaatatggagtttgagaagttggagaatagacttggtag |
235 |
Q |
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| T |
23052760 |
caaatatggagtttgagaagttggagaatagacttggtag |
23052721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 31252026 - 31252189
Alignment:
| Q |
60 |
gtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgagatttatcagaaccaaca |
159 |
Q |
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| T |
31252026 |
gtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatcagggccaaca |
31252125 |
T |
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| Q |
160 |
ttaatctgtgatgcaggagagatggatttactttttcaaatatggagtttgagaagttggagaa |
223 |
Q |
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| T |
31252126 |
ttaatttgtgatgcaggagagatggatttacttttctatatatgcagtttgagaagtttgagaa |
31252189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 25815114 - 25814937
Alignment:
| Q |
63 |
attttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgagatttatcagaaccaacatta |
162 |
Q |
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|||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||| || ||||||||| |
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| T |
25815114 |
attttatacatggtaatgaaatgagataagaatcaat-agatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacatta |
25815016 |
T |
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| Q |
163 |
atctgtgatgcaggagagatggatttactttttcaaatatggagtttgagaagttggagaatagacttggtagtataat |
241 |
Q |
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| T |
25815015 |
atttgtaatgcaagagagatggatttacttttctatatatgcagtttgagaagtttgagaacatacttagtaatataat |
25814937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 25815209 - 25815164
Alignment:
| Q |
5 |
aagtggtgatttattagggg-accattccaaaactgcataaaactt |
49 |
Q |
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| T |
25815209 |
aagtggtgatttattaggggtagcattccaaaactgcataaaactt |
25815164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 31251934 - 31251979
Alignment:
| Q |
5 |
aagtggtgatttattagggg-accattccaaaactgcataaaactt |
49 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
31251934 |
aagtggtgatttattaggggtagcattccaaaactgcataaaactt |
31251979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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