View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_3 (Length: 736)
Name: NF8214_low_3
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 289 - 719
Target Start/End: Original strand, 54607192 - 54607630
Alignment:
| Q |
289 |
ttgttaaaacttgtaagactataaccgtgagtagttgacattgcctcatattatacatataagcaaactcactca----ctgtgacnnnnnnnctcttcc |
384 |
Q |
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| T |
54607192 |
ttgttaaaacttgtaagactataactgtgagtagttgacattgcctcatattatacatataagcaaactcactcattcactatgactttttttttcttcc |
54607291 |
T |
|
| Q |
385 |
tccaaatcgtgtaagtccnnnnnnncctagcaccacctaacgta--------tttccttcgagccttggtc-----gtcttaacagaagcatcagcatca |
471 |
Q |
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| T |
54607292 |
tccaaatcgtgtaagtcctttttttcctagcaccacctaacgtagttcctcttttccttcgagccttggcctggccgtcttaacagaagcatcagcatca |
54607391 |
T |
|
| Q |
472 |
acatcaatagaagtggaacagttaacgagttgagaatgagaaacataatagttcacctccaacaaagacacatcacacttacgtctaccacgtcttataa |
571 |
Q |
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| T |
54607392 |
g------tagaagtggaacagttaacgagttgagaataagaaacataatagttcacctccaacaaagacacatcacacttacgtctaccacgtctta--- |
54607482 |
T |
|
| Q |
572 |
gtccatatccatatatcgattaacacttgtttttgccatcttcttccttcctctcaatctgaaccgaaaaccctacactgccgcactcaatagactagat |
671 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54607483 |
gtccatatccatatattggttaacacttgtttttgccatcttcttccttcctctcaatctgaaccgaaaaccctacactgccgcactcaatagactagat |
54607582 |
T |
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| Q |
672 |
actgnnnnnnnctcccatctcaatcgaagaagggtttcggttaatttg |
719 |
Q |
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| T |
54607583 |
actgtttttttctcccatctcaatcgaagaagggtttcggttaatttg |
54607630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 54606651 - 54606858
Alignment:
| Q |
34 |
ggaagtttttactacttacgtactatcgatctaagctaaaaatatagtattacattaactagcagcagtcccagttaaatgtttttacattggcacctgg |
133 |
Q |
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| T |
54606651 |
ggaagtttttactacttacgtactatcgatctaagctaaaaatatagtattacattaactagcagcagtcccagttaaatgtttttacattggcacctgg |
54606750 |
T |
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| Q |
134 |
cttc-----aaaggttgtattctttctgtgtattttttgaacagatttccttcaacnnnnnnnttccctaaaaaacatgtccctaattaattagccttcc |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
54606751 |
cttcaaattaaaggttgtattctttctgtgtattttttgaacagatttccttcaacaaaaaaattccctcaaaaacatgtccc-------ttagccttcc |
54606843 |
T |
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| Q |
229 |
cttaaccacaatccc |
243 |
Q |
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||||||||||||||| |
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| T |
54606844 |
cttaaccacaatccc |
54606858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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