View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_36 (Length: 239)
Name: NF8214_low_36
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 42351664 - 42351441
Alignment:
| Q |
1 |
caaaaaacaatctgatatatcaatatgtcaagtaagtaaagttatgtagctagagaattatggattctttacctctttccatctctagcaggatcagaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42351664 |
caaaaaacaatctgatatatcaatttgtcaagtaattaaagttaggtagctagagaattatggattctttacctctttccatctctagcaggatcagaaa |
42351565 |
T |
|
| Q |
101 |
ataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42351564 |
ataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccggg |
42351465 |
T |
|
| Q |
201 |
cttgtcactgcacatcatctatct |
224 |
Q |
| |
|
|||||||||| ||||||||||||| |
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| T |
42351464 |
cttgtcactgtacatcatctatct |
42351441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27559256 - 27559458
Alignment:
| Q |
1 |
caaaaaacaatctgatatatcaatatgtcaagtaagtaaagttatgtagctagagaattatggattctttacctctttccatctctagcaggatcagaaa |
100 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27559256 |
caaagaacaattcgatatatcaatttgtcaagtaagtaaagttaggtagctagataattatggattctttacctctttccatctctagcaggatcagaaa |
27559355 |
T |
|
| Q |
101 |
ataagcaatccttggttggtcttcctggaagtttagctcttaatatagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtgtccggg |
200 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
27559356 |
ataagcaatcctttgttggtcttcctagaagtttagctcttaatgtagaaccgtcaggaagtacaagcttcttcaaaagattgaagtcgtggtttcccgg |
27559455 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
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||| |
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|
| T |
27559456 |
ctt |
27559458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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