View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_38 (Length: 238)
Name: NF8214_low_38
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 46543985 - 46543779
Alignment:
| Q |
18 |
catatcgcatcttatgacagtcatggtcaaaaaatcaaaagcctatatgaatgaatgaacgattaaaatggaataacatgaagnnnnnnnnnnnnnnnnn |
117 |
Q |
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| T |
46543985 |
catatcgcatcttatgacagtcatggtcaaaaaatcaaaagcctatatgaatgaatgaacgattaaaatggaataacatgaagaaaaaaacactgaaaag |
46543886 |
T |
|
| Q |
118 |
nnnnnnngtgtttgatggatgggaataaagatgtgagtcaaataagaaccaaattgatgaagactcatttatcactttctttgtttcccagtttcagtcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46543885 |
gaaaaaagtgtttgatggatgggaataaagatgtgagtcaattaagaaccaaattgatgaagactcatttatcactttctttgtttcccagtttcagtcg |
46543786 |
T |
|
| Q |
218 |
caacacc |
224 |
Q |
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||||||| |
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| T |
46543785 |
caacacc |
46543779 |
T |
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