View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_41 (Length: 212)
Name: NF8214_low_41
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 191
Target Start/End: Complemental strand, 4597431 - 4597342
Alignment:
| Q |
102 |
tttctccaaatacattttataattttttatctggagattgagaatgtagtcattgtagtggaatcttatttactttattaatgcatcaac |
191 |
Q |
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| T |
4597431 |
tttctccaaatacattttataattttttatctggtgattgagaatgtagtcattgtagtggaatcttatttactttattaatgcatcaac |
4597342 |
T |
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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 4597595 - 4597503
Alignment:
| Q |
12 |
agcagagagtacataataagtaacctcaatgtaaaatagtccaatggatcattttaatatgggatagatggaacagtaaaacttatatttttt |
104 |
Q |
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| T |
4597595 |
agcatagagtacataataagtaacctcaatgtaaaatagtccaatggatcattttaatatgggatagaaggaacagtaaaacttatatttttt |
4597503 |
T |
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