View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_6 (Length: 534)
Name: NF8214_low_6
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 43386271 - 43385911
Alignment:
| Q |
21 |
tgtgtgtgtgtctgaaagagagagattctgtgcactgggactgttgttgatcttatcaggtggttttgagaaacaacaaaatatttaatcaaatacttct |
120 |
Q |
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| T |
43386271 |
tgtgtgtgtgtctgaaagagagagattctgtgcactgggactgttg---atcttatcaggtggtgttgagaaacaacaaaatatttaatcaaatacttct |
43386175 |
T |
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| Q |
121 |
tctttaaattattaagttaattaaagatgtgctcatatacatgcaggaactactacaagtgttcaggtgaaagatgtggtgtgaagaaaagggtggaaag |
220 |
Q |
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| T |
43386174 |
tctttaaattattaagttaattaaagatgtgctgatatacatgcaggaactactacaagtgttcaggtgaaagatgtggtgttaagaaaagggtggaaag |
43386075 |
T |
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| Q |
221 |
ggatagggaagattcaagctatgtgttaacaagctatgaaggtgttcacaatcacgaaagcccctgcaattcatactgcaccccagtgtctttggtgtat |
320 |
Q |
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| T |
43386074 |
ggatagggaagattcaagctatgtgttaacaagctatgaaggtgttcacaatcacgaaagcccctgcaattcatactgcaccccagtgtctttggtgtat |
43385975 |
T |
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| Q |
321 |
tccaatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
384 |
Q |
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| T |
43385974 |
tccaatgaatggccacagcagaacccttctgcaacctcttcttccaattaatgctaagttaatc |
43385911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 419 - 518
Target Start/End: Complemental strand, 43385864 - 43385765
Alignment:
| Q |
419 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
518 |
Q |
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| T |
43385864 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
43385765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 419 - 518
Target Start/End: Complemental strand, 8775288 - 8775189
Alignment:
| Q |
419 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
518 |
Q |
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| T |
8775288 |
gctagctgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcagagttattttctgctaaaca |
8775189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 8775388 - 8775319
Alignment:
| Q |
315 |
gtgtattccaatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
384 |
Q |
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| T |
8775388 |
gtgtattccaacgaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
8775319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 419 - 518
Target Start/End: Original strand, 1692084 - 1692183
Alignment:
| Q |
419 |
gctagctgctcttaataaaaggctaggaaggtttgatcgagttggtaagttgtattggctatcttcctgttatctaatcatagttattttctgctaaaca |
518 |
Q |
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|||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1692084 |
gctaactgctcttaataaaaggctagaaaggtctgatcgagttggtaagttgtattggctatcttcctgttatctaatcacagttattttctgctaaaca |
1692183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 1691984 - 1692053
Alignment:
| Q |
315 |
gtgtattccaatgaatggccacagcagaacccttcagcaacctcttcttccaattaatgctaagttaatc |
384 |
Q |
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| T |
1691984 |
gtgtattccaatgaatggccgctgcagcacccttctgcaacctcttcttccaattaatgctaagttaatc |
1692053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 38399426 - 38399322
Alignment:
| Q |
164 |
caggaactactacaagtgttcaggtgaaagatgtggtgtgaagaaaagggtggaaagggatagggaagattcaagctatgtgttaacaagctatgaaggt |
263 |
Q |
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| T |
38399426 |
caggaactactacaaatgttcaagtgtgggatgtaatgtgaagaaaagggtggaaagggatagagatgattcgagctatgtgataacaagttatgaaggt |
38399327 |
T |
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| Q |
264 |
gttca |
268 |
Q |
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| T |
38399326 |
gttca |
38399322 |
T |
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