View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_7 (Length: 479)
Name: NF8214_low_7
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 3321506 - 3321947
Alignment:
| Q |
8 |
agtagcagagacatcaacatagaaattgttgtttttattgtaaataataatatatgaaatagacgatannnnnnnccctttctagtttttgtatgcaccg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3321506 |
agtagcacagacatcaacatagaaattgttgtttttattgtaaataataatatatgaaatagacgatatttttttccctttctagtttttgtatgcaccg |
3321605 |
T |
|
| Q |
108 |
ttagattatatgtttattactatcaattgcaactttgtgtcaggtctgaactgatgggcagtggttttggttttggtttcggcattctaaagtgagctgt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3321606 |
ttagattatatgtttattactatcaattgcaactttgtgtcaggtctgaactgatgggcagtggttttggttt------cggcattctaaagtgagctgt |
3321699 |
T |
|
| Q |
208 |
ttgtattgaagtgcagttgacttgaaatgaattattgtttaatannnnnnnnnnnnnnnnngttaaaaatttctaattggttgatgtaaattgaaagtga |
307 |
Q |
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|||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
3321700 |
ttgtattgaagtgcagttga-----aatgaattcttgtttagtatttttattttttattttgttaaaaatttctaattggttgatgtaaattgaaagtga |
3321794 |
T |
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| Q |
308 |
tataatagctgtttgaattcttcaggggattattcttgttccaaactcaatctatatgcaaccgatcgactttgagcttaaatttcatgcggaaaggatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3321795 |
tataatagctgtttgaattcttcaggggattattcttgttccaaactcaatctatatgcaaccgatcgactttgagcttaaatttcatgcggaaaggatg |
3321894 |
T |
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| Q |
408 |
actttaatggcttagatttttaagtacttgtgaattttgataccaatctagct |
460 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3321895 |
actttaatggcttagatttttaggtacttgtgaattttgataccaatctagct |
3321947 |
T |
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