View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_8 (Length: 467)
Name: NF8214_low_8
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 190 - 414
Target Start/End: Complemental strand, 5110627 - 5110398
Alignment:
| Q |
190 |
cactaaatgttttcattgtcgtagaattggttgttatttatgaaactggactcaatcacgaattaatcacgacatgctcttgta---tatgaatcacgga |
286 |
Q |
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| T |
5110627 |
cactaaatgttttcattgtcgtagaattggttgttatttatgaaactggactcaatcacgaattaatcacgacatgctcttgtattctatgaatcacgga |
5110528 |
T |
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| Q |
287 |
catgacatggacacgtcaaaagtgatgattatttgaaaaaataacttaattgaatgtaatt--gtgtgttgacgtcgatattagacactgacacgtatcg |
384 |
Q |
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| T |
5110527 |
catgacatggacacgtcaaaaccgatgattatttgaaaaaataacttaattgaatgtaattacgtgtgttgacgtcgatattagacactgacacatatgg |
5110428 |
T |
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| Q |
385 |
gacaccagacacacctccgatcagaggtta |
414 |
Q |
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| T |
5110427 |
gacaccagacacacctccgatcagaggtta |
5110398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 5110803 - 5110661
Alignment:
| Q |
16 |
caaagaacaagacatgcagg--aagaaaagaaagttagtccttaattttactcttttttcagatatataatttgttggcacttttgtgtaaacaattatt |
113 |
Q |
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| T |
5110803 |
caaagaacaagacatgcaaggaaagaaaagaaagtcagtccttaattttactcttttttcatatatataatttgttggcacttttgtgttaacaattatt |
5110704 |
T |
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| Q |
114 |
tttgctgtgttccctcattttgtacctcacattagaactgatg |
156 |
Q |
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| T |
5110703 |
tttgttgtgttccctcattttgtacctcacattagaactgatg |
5110661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 416 - 455
Target Start/End: Complemental strand, 5109651 - 5109612
Alignment:
| Q |
416 |
catttaggtatgaactcggtcgccagccggctaacaccaa |
455 |
Q |
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| T |
5109651 |
catttaggtatgaactcggtcgccagccggctaacaccaa |
5109612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 49345738 - 49345770
Alignment:
| Q |
314 |
attatttgaaaaaataacttaattgaatgtaat |
346 |
Q |
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| T |
49345738 |
attatttgaaaaaataacataattgaatgtaat |
49345770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 455
Target Start/End: Complemental strand, 3488294 - 3488258
Alignment:
| Q |
419 |
ttaggtatgaactcggtcgccagccggctaacaccaa |
455 |
Q |
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| T |
3488294 |
ttaggtatgagctcggtcgccagccagctaacaccaa |
3488258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 346
Target Start/End: Original strand, 34863491 - 34863523
Alignment:
| Q |
314 |
attatttgaaaaaataacttaattgaatgtaat |
346 |
Q |
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| T |
34863491 |
attatttgaaaaaatgacttaattgaatgtaat |
34863523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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