View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8214_low_9 (Length: 462)
Name: NF8214_low_9
Description: NF8214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8214_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 298 - 435
Target Start/End: Complemental strand, 35653086 - 35652950
Alignment:
| Q |
298 |
tttcgtttcctttgttagattcattaaattaatatttgaaacatgccaagttttctattaggtaatgctgcatgtagcgaaagaagttattgtgaatcca |
397 |
Q |
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| T |
35653086 |
tttcgtttcctttgttagattcattaaattaatatttgaaacatgccaagttttctattaggtaatgctgcatgtagcgaaagaagttattgtgaatcca |
35652987 |
T |
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| Q |
398 |
tcacaaataatttcatcatgatttaaaaaccaagacaa |
435 |
Q |
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| T |
35652986 |
tcacaaataatttcatcatgattt-aaaaccaagacaa |
35652950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 147 - 301
Target Start/End: Complemental strand, 35653271 - 35653117
Alignment:
| Q |
147 |
catgcttcctatccaaaagccaaattcaagaagaaagggaatacctcatagggcacccnnnnnnnaaggcctaaatcatgtaattgagaaatttaaataa |
246 |
Q |
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| T |
35653271 |
catgcttcctatccaaaagccaaattcaagaagaaagggaatacctcatagggcaccctttttttaaggcctaaatcatgtaattgagaaatttaaataa |
35653172 |
T |
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| Q |
247 |
tacaatatcatctatttagagatagatttctagctagatccataattatgttttc |
301 |
Q |
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| T |
35653171 |
tacaatatcatctatctagagatagatttctagctagatccatatttatgttttc |
35653117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 35676906 - 35676866
Alignment:
| Q |
163 |
aagccaaattcaagaagaaagggaatacctcatagggcacc |
203 |
Q |
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| T |
35676906 |
aagccaaattcaaaaagaaagggaatagctcatagggcacc |
35676866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 35682941 - 35682901
Alignment:
| Q |
163 |
aagccaaattcaagaagaaagggaatacctcatagggcacc |
203 |
Q |
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| T |
35682941 |
aagccaaattcaaaaagaaagggaatagctcatagggcacc |
35682901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 286
Target Start/End: Complemental strand, 35668053 - 35667937
Alignment:
| Q |
167 |
caaattcaagaagaaagggaatacctcatagggcacccnnnnnnnaagg-cctaaatcatgtaattgagaaatttaaataatacaatatcatctatttag |
265 |
Q |
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| T |
35668053 |
caaattcaagaagaaagggaatacctcaacgggcacctttcttttaaggccctaaatcaaggattagagagatttaaataatacactatcgtc----tgg |
35667958 |
T |
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| Q |
266 |
agatagatttctagctagatc |
286 |
Q |
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| T |
35667957 |
agatagatttctagctagatc |
35667937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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