View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8215_low_2 (Length: 414)

Name: NF8215_low_2
Description: NF8215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8215_low_2
NF8215_low_2
[»] chr7 (4 HSPs)
chr7 (208-370)||(39645495-39645657)
chr7 (11-159)||(39645296-39645447)
chr7 (303-383)||(39645664-39645744)
chr7 (296-381)||(10027147-10027232)
[»] chr5 (4 HSPs)
chr5 (280-391)||(13040312-13040424)
chr5 (280-391)||(13110305-13110417)
chr5 (328-381)||(13416361-13416413)
chr5 (324-356)||(26449095-26449127)
[»] chr2 (5 HSPs)
chr2 (295-391)||(18666027-18666123)
chr2 (280-391)||(7671088-7671200)
chr2 (280-381)||(16567065-16567167)
chr2 (324-381)||(13995542-13995599)
chr2 (293-381)||(15262227-15262315)
[»] chr1 (4 HSPs)
chr1 (301-391)||(50004248-50004337)
chr1 (280-391)||(4952058-4952169)
chr1 (301-391)||(45791965-45792055)
chr1 (324-381)||(37346161-37346218)
[»] chr3 (2 HSPs)
chr3 (294-391)||(44762426-44762523)
chr3 (324-381)||(40700829-40700886)
[»] chr4 (2 HSPs)
chr4 (280-383)||(24155752-24155856)
chr4 (280-342)||(29539785-29539846)
[»] chr6 (1 HSPs)
chr6 (296-381)||(4043525-4043610)
[»] chr8 (2 HSPs)
chr8 (280-342)||(38503712-38503775)
chr8 (280-391)||(7548712-7548824)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 208 - 370
Target Start/End: Original strand, 39645495 - 39645657
Alignment:
Q  208 cattaagaatgaagatgacaacatccctaaacataggaagaagacgattgacaaatttattttataactttgtataattaattacagggtaactttgtca 307  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  39645495 cattaagaatgaagatgacgacatctctaaacataggaagaagacgattgacaaatttattttataactttgtataattaattacagggtaattatgtca 39645594  T
Q  308 tttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggat 370  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||||||||    
T  39645595 tttaattgtgatatgtatgatatcatatttcttatcatgtgtgcaccaaacatatgataggat 39645657  T

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Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 39645296 - 39645447
Alignment:
Q  11 cagagacaacagttagttgggt---gagtttagattgtaactgtaaaaaatttataggtttctgctggcgtatgaannnnnnnnnnacaagttagagtta 107  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  39645296 cagagacaacaattagttgggttaagagtttagattgtaactgtaaaaaatttataggtttctgctggcgtatgaattttttttttacaagttagagtta 39645395  T
Q  108 cacaaaggggatttgattgaactttgtaattgaaaaaggaagaagacagtaa 159  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39645396 cacaaaggggatttgatagaactttgtaattgaaaaaggaagaagacagtaa 39645447  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 39645664 - 39645744
Alignment:
Q  303 tgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatctt 383  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39645664 tgtcatttaactgtgatatgtatgatatcatgtttcttatcatatgtgcaccaaacaaatgataggatcaatgtttatctt 39645744  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 10027147 - 10027232
Alignment:
Q  296 gtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||| |||||||||||||| |||| | |||||||| || ||| |||||||||||||| |||  |  ||||| ||| ||||||||||    
T  10027147 gtaattttgtcatttaattatgatttatatgatattatatttgttatcatatgtgcatcaaatatgtgatatgataaatgtttatc 10027232  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 13040312 - 13040424
Alignment:
Q  280 tataattaattacaggg-taactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    ||||||||||||||  | ||| ||||||||||||||||||| | |||||||| |||||| ||||||| |||||| ||| || |||||||||| |||||||    
T  13040312 tataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttatcatgtgtgcatcaaacatatgataggataaatgttt 13040411  T
Q  379 atcttgtttatat 391  Q
    ||||||| |||||    
T  13040412 atcttgtctatat 13040424  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 13110305 - 13110417
Alignment:
Q  280 tataattaattacaggg-taactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    ||||||||||||||  | ||| ||||||||||||||||||| | |||||||| |||||| ||||||| |||||| ||| || |||||||||| |||||||    
T  13110305 tataattaattacaatgataattttgtcatttaattgtgatgtatatgatattatgtttgttatcatgtgtgcatcaaacatatgataggataaatgttt 13110404  T
Q  379 atcttgtttatat 391  Q
    ||||||| |||||    
T  13110405 atcttgtctatat 13110417  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 381
Target Start/End: Complemental strand, 13416413 - 13416361
Alignment:
Q  328 tatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||||| |||||||||||||||||||||| || || ||||||| ||||||||||    
T  13416413 tatcatctttcttatcatatgtgcaccaaacacataataggat-aatgtttatc 13416361  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 26449095 - 26449127
Alignment:
Q  324 atgatatcatgtttcttatcatatgtgcaccaa 356  Q
    |||||||||| ||||||||||||||||||||||    
T  26449095 atgatatcatctttcttatcatatgtgcaccaa 26449127  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 391
Target Start/End: Original strand, 18666027 - 18666123
Alignment:
Q  295 ggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatcttgtttatat 391  Q
    ||||| ||||||||||||||||||||| |||||||| |||||| ||||||| |||||| ||| ||  ||||||||| |||||||||| ||| |||||    
T  18666027 ggtaattttgtcatttaattgtgatatatatgatattatgtttgttatcatgtgtgcatcaaacatgtgataggataaatgtttatcctgtctatat 18666123  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 7671088 - 7671200
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    |||||||||||| | |||||| ||||||||||||||||||||| |||||||| |||||| |||| || ||| || ||| ||  ||||||||| |||||||    
T  7671088 tataattaattataagggtaattttgtcatttaattgtgatatatatgatattatgtttgttataatgtgtacaacaaacatgtgataggataaatgttt 7671187  T
Q  379 atcttgtttatat 391  Q
    ||| ||| |||||    
T  7671188 atcatgtctatat 7671200  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 381
Target Start/End: Complemental strand, 16567167 - 16567065
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    |||||||||||| | |||||| ||||||||||| || |||| | |||||||| |||||| ||||||| |||||| ||| ||  ||||| ||| |||||||    
T  16567167 tataattaattataagggtaattttgtcatttagttatgatttatatgatattatgtttgttatcatgtgtgcatcaaacatgtgatatgataaatgttt 16567068  T
Q  379 atc 381  Q
    |||    
T  16567067 atc 16567065  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 13995599 - 13995542
Alignment:
Q  324 atgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||||||||||||||||||||| || ||| ||| || |||||||||| ||||||||||    
T  13995599 atgatatcatgtttcttatcatgtgcgcatcaaacacatgataggattaatgtttatc 13995542  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 15262315 - 15262227
Alignment:
Q  293 agggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    ||||||| ||| ||||||||||||||||| ||| ||||| | ||| ||||||| |||||| ||| || |||||  ||| ||||||||||    
T  15262315 agggtaattttatcatttaattgtgatatatatcatatcctatttgttatcatgtgtgcatcaaacacatgatgagataaatgtttatc 15262227  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 50004337 - 50004248
Alignment:
Q  301 tttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatcttgtttatat 391  Q
    |||||| ||||||| |||||| ||||||||||||||| ||||||| |||||||||| || |||||||||| |||| ||||| |||||||||    
T  50004337 tttgtcgtttaattatgatatatatgatatcatgtttgttatcatgtgtgcaccaaacatatgataggataaatg-ttatcatgtttatat 50004248  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 4952058 - 4952169
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    |||||||||||| | |||||  ||||| |||||||| |||||| ||||||||||||||| |||| || |||||||||| || |||||||||| |||| ||    
T  4952058 tataattaattataagggtacttttgttatttaattatgatatatatgatatcatgtttgttattatgtgtgcaccaaacatatgataggataaatg-tt 4952156  T
Q  379 atcttgtttatat 391  Q
    ||| |||||||||    
T  4952157 atcatgtttatat 4952169  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 45792055 - 45791965
Alignment:
Q  301 tttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatcttgtttatat 391  Q
    |||||||||||||| |||||| |||||||| |||||| ||||||| ||| |   || || |||||||||| |||||||||| ||| |||||    
T  45792055 tttgtcatttaattatgatatatatgatattatgtttgttatcatgtgtactataaacatatgataggataaatgtttatcatgtctatat 45791965  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 37346218 - 37346161
Alignment:
Q  324 atgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||||||||||||| ||||||| || ||| ||| || |||||||||| ||||||||||    
T  37346218 atgatatcatgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatc 37346161  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 44762523 - 44762426
Alignment:
Q  294 gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatcttgtttatat 391  Q
    |||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| |||||| ||| || |||||||||   ||||||||||||| |||||    
T  44762523 gggtaattttgtcatttaattgtaatatatataatatcatgtttgttatcatgtgtgcatcaaacatatgataggacagatgtttatcttgtctatat 44762426  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 40700886 - 40700829
Alignment:
Q  324 atgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||||||||||||| ||||||| |||||| ||| || |||||||||| ||||||||||    
T  40700886 atgatatcatgtttgttatcatgtgtgcatcaaacacatgataggattaatgtttatc 40700829  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 383
Target Start/End: Original strand, 24155752 - 24155856
Alignment:
Q  280 tataattaattacaggg-taactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    |||||||||||||| || ||| ||||||||||||| ||||||| |||||||| |||||| ||||| | |||||| ||| ||  ||||| ||| |||||||    
T  24155752 tataattaattacaaggctaattttgtcatttaatagtgatatatatgatattatgtttgttatcgtgtgtgcatcaaacacgtgataagataaatgttt 24155851  T
Q  379 atctt 383  Q
    |||||    
T  24155852 atctt 24155856  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 29539785 - 29539846
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttat 342  Q
    |||||||||||| | |||||| ||||||||||||||||||||  |||||||| |||||| ||||    
T  29539785 tataattaattataagggtaattttgtcatttaattgtgata--tatgatattatgtttgttat 29539846  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 4043610 - 4043525
Alignment:
Q  296 gtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgtttatc 381  Q
    |||| ||||||||||||||||||||| ||| ||||| | ||| ||||||| |||||| ||| || ||||| |||| ||||||||||    
T  4043610 gtaattttgtcatttaattgtgatatatatcatatcttatttattatcatgtgtgcatcaaacacatgatgggataaatgtttatc 4043525  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 38503775 - 38503712
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttat 342  Q
    ||||||||||| || |||||| | ||||||||||||||||||| |||||||| |||||| ||||    
T  38503775 tataattaattgcaagggtaattatgtcatttaattgtgatatatatgatattatgtttgttat 38503712  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 7548712 - 7548824
Alignment:
Q  280 tataattaattaca-gggtaactttgtcatttaattgtgatatgtatgatatcatgtttcttatcatatgtgcaccaatcaaatgataggatcaatgttt 378  Q
    |||||||||||||| |||||| |||||||||||||| | ||   |||||||| |||| |  |||||| |||||| ||| ||  ||||| ||| |||||||    
T  7548712 tataattaattacaagggtaattttgtcatttaattattattgatatgatattatgtctgctatcatgtgtgcatcaaacatgtgatatgataaatgttt 7548811  T
Q  379 atcttgtttatat 391  Q
    ||| ||| |||||    
T  7548812 atcctgtctatat 7548824  T

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