View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8215_low_4 (Length: 328)
Name: NF8215_low_4
Description: NF8215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8215_low_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 40722137 - 40721827
Alignment:
| Q |
18 |
cttaccaccaaaaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaag |
117 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40722137 |
cttaccaccataaacatggttatgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctcaaaattaaag |
40722038 |
T |
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| Q |
118 |
acctttattgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgatcctctggttctgtccttcaagtcg |
217 |
Q |
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|||||| |||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
40722037 |
acctttgttgttgatcaaatattcaccctggtttcgttttccacgacaagtcgagtcataccgctatttccgtattcctctggttctgtccttcaagtcg |
40721938 |
T |
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| Q |
218 |
taccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttc |
317 |
Q |
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| T |
40721937 |
taccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttg |
40721838 |
T |
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| Q |
318 |
agtttgttgtt |
328 |
Q |
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||||||||||| |
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| T |
40721837 |
agtttgttgtt |
40721827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 26795172 - 26794853
Alignment:
| Q |
19 |
ttaccaccaaaaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaaga |
118 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
26795172 |
ttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaaga |
26795073 |
T |
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| Q |
119 |
cctttattgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatt----------tctgtgatcctctggttctgtcc |
208 |
Q |
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||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
26795072 |
cctttgttgttgatcaaatattcaccctagttccgttttcctccacaagtcgagtcataccgctatttatgtgttcctctgtattcctctggttctgtcc |
26794973 |
T |
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| Q |
209 |
ttcaagtcgtaccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794972 |
ttcaagtcgtaccactgtatatgtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttc |
26794873 |
T |
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| Q |
309 |
cttggtttcagtttgttgtt |
328 |
Q |
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|||||||||||||||||||| |
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| T |
26794872 |
cttggtttcagtttgttgtt |
26794853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 16003793 - 16003612
Alignment:
| Q |
18 |
cttaccaccaaaaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaag |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
16003793 |
cttaccaccataaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttcctttcaattctcaaaattaaag |
16003694 |
T |
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| Q |
118 |
acctttattgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgatcctctg |
199 |
Q |
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| T |
16003693 |
acctttgttgttgatcaaatattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgttcctctg |
16003612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 137 - 314
Target Start/End: Original strand, 27222822 - 27222999
Alignment:
| Q |
137 |
tattcaccctggttccattttcctccacaagtcgagtcataccgctatttctgtgatcctctggttctgtccttcaagtcgtaccactgtatatgtttaa |
236 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
27222822 |
tattcaccctggttccgttttcctccacaagtcgagtcatactgctatttctgtattcctctggttctgcccttcaagtcgtatcactgtatatgtttaa |
27222921 |
T |
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| Q |
237 |
tgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggt |
314 |
Q |
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| T |
27222922 |
tgttgcatcactgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggt |
27222999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 27221945 - 27222063
Alignment:
| Q |
18 |
cttaccaccaaaaacatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattttatattgatttccttccaattctgaaaattaaag |
117 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
27221945 |
cttaccaccataaatatggttctgttcttgcaagatccatcacaaaatagaggtagttttagattctatattgatttccttccaattctcaaaattaaag |
27222044 |
T |
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| Q |
118 |
acctttattgttgatcaaa |
136 |
Q |
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|||||| |||||||||||| |
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| T |
27222045 |
acctttgttgttgatcaaa |
27222063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 3384768 - 3384672
Alignment:
| Q |
231 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
328 |
Q |
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||||||||||||| |||||||| | ||||||||| ||||||| |||| |||||||||||||| |||||||||| |||||| ||||| ||||||||| |
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| T |
3384768 |
gtttaatgttgcaactctgagtctgctttctcttaattagttaattgctttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtt |
3384672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 5155564 - 5155468
Alignment:
| Q |
231 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaatagttccttggtttcagtttgttgtt |
328 |
Q |
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| T |
5155564 |
gtttaatgttccaactctgagtctgctttctcttaattagttaatttccttgttcctcatataaaaacctaataattcctt-ctttcaatttgttgtt |
5155468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 8530684 - 8530757
Alignment:
| Q |
231 |
gtttaatgttgcatctctgagtgttctttctctttattagtttattgtcttgttcctcatatagaaacctaata |
304 |
Q |
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||||||||||||| |||||||| | ||||||||| ||||||| ||| ||||||||||||||| |||||||||| |
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| T |
8530684 |
gtttaatgttgcaactctgagtctactttctcttaattagttaattaccttgttcctcatataaaaacctaata |
8530757 |
T |
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