View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8215_low_5 (Length: 251)
Name: NF8215_low_5
Description: NF8215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8215_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27230595 - 27230357
Alignment:
| Q |
1 |
taattgtcaacttgatgagtatacactcaagtttaagcaacaatgccctaatgctcatatatattctggtgataataagcctcctatgtatcaatgtaaa |
100 |
Q |
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| T |
27230595 |
taattgtcaacttgatgagtatacactcaagtttaagcaacaatgccctaatgctcatatatattctggtgataataagcctcctatgtatcaatgtaaa |
27230496 |
T |
|
| Q |
101 |
ggggctgaaagttatgatataactttttgtcctgctattggaagtgcaacttaggttttttaaatagtttattataattatattttgtaatagattgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
27230495 |
ggggctgaaagttatgatataactttttgtcctgctattggatctgcaacttaggttttttaaatagattattataattatattttgtaatagattgtct |
27230396 |
T |
|
| Q |
201 |
ctattgacttaggtcatgagttatgagacatgaaagtat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27230395 |
ctattgacttaggtcatgagttatgagacatgaaagtat |
27230357 |
T |
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