View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8216_high_1 (Length: 498)
Name: NF8216_high_1
Description: NF8216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8216_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 27230605 - 27231084
Alignment:
| Q |
1 |
caacaatgttcgtcatcattaaacacatcacaagcactattacaccctacataaaatccattagcattataagctattaaagatggtggacaaacatttc |
100 |
Q |
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| T |
27230605 |
caacaatgttcatcatccttaaacacatcacaagcactattacaccctacataaagtccattagcattataagctattaaagatggtggacaaacatttc |
27230704 |
T |
|
| Q |
101 |
caaaatccatattacaggtcacaactggacatggacctgaaccatccaacaatgttccaccaacaggtttgatattaacaaaaatattttgtccatgaat |
200 |
Q |
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| T |
27230705 |
caaaatccatattacaggtcacaactggacatggacctgatccatccaacaatgttccaccaacaggtttgatattaacaaaaatattttgtccatgaat |
27230804 |
T |
|
| Q |
201 |
caaacttatttcataggaaacaattgattcgttaacgttgaaattgagaagtgttacgggataattaggtgttgtgtctgcacactctcgagtccctaat |
300 |
Q |
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| T |
27230805 |
caaacttatttcataggaaacaattgattcgttaacgttgaaattgagaagtgttacgggataattaggtgttgtgtctgcacactctcgagtccctaat |
27230904 |
T |
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| Q |
301 |
cggcaatcaccagtttcacatgaaaaataatcatctgcatttgttgtgcattctgttcttgcccaaattgatccactataatgatcatccatgttgaata |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27230905 |
cggcaatcaccagtttcacatgaaaaataatcatctgtatttgttgtgcattctgttcttgcccaaattgatccactataatgatcatccatgttgaata |
27231004 |
T |
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| Q |
401 |
tttcgtagatttctggacctagttctggttctaaatcccccatgcttgggtttgatgcacgccatattgagtgtgagcat |
480 |
Q |
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| T |
27231005 |
tttcgtagatttctggacctagttctggttctaaatcccctatgcttgggtttgatgcacgccatattgaatgtgagcat |
27231084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 27270493 - 27270522
Alignment:
| Q |
451 |
tttgatgcacgccatattgagtgtgagcat |
480 |
Q |
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| T |
27270493 |
tttgatgcacgccatattgagtgtgagcat |
27270522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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