View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8216_high_3 (Length: 274)
Name: NF8216_high_3
Description: NF8216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8216_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 261
Target Start/End: Complemental strand, 44226455 - 44226199
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44226455 |
tatataagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggagttggatcacgttatggttagt |
44226356 |
T |
|
| Q |
105 |
ctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattatttttgggatccaacagacatgctatcc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226355 |
ctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattatttttgggatccaacagacatgctatcc |
44226256 |
T |
|
| Q |
205 |
gagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44226255 |
gagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
44226199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 44237256 - 44237013
Alignment:
| Q |
2 |
gcttatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggtt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44237256 |
gcttatatcagccaacatgatgttcatattggagaaatgactgtgagagaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggtt |
44237157 |
T |
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| Q |
102 |
agtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattatttttgggatccaacagacatgcta |
201 |
Q |
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| T |
44237156 |
agtctatttttactaccttgttaatgttttttaatatctaatttgaaatgtggctaaagcttaacttgtta----------------aacagacatgcta |
44237073 |
T |
|
| Q |
202 |
tccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
261 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
44237072 |
tccgagctttctagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtc |
44237013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 44214288 - 44214034
Alignment:
| Q |
2 |
gcttatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggtt |
101 |
Q |
| |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||| |
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| T |
44214288 |
gcttatatcagccagcatgatgttcacattggagaaatgactgtgagggaaaccttagctttctcagcaaggtgccaaggagttggatctcgttacggtg |
44214189 |
T |
|
| Q |
102 |
agtctatttttactacctagttaatgttttttaaaatctaatttgaaatgtggctaaagcttaacttgttaattatttttgggatccaacagacatgcta |
201 |
Q |
| |
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|||| | ||||| ||| ||| || |||| ||||||||||||| |||| ||||||||| |||| || | | |||||| ||||| |||||||||||| |
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| T |
44214188 |
agtcaa--tttaccaccatattattg-ttttcaaaatctaatttgctgtgtgactaaagcttgacttatt-actgtttttgtgatcc-acagacatgcta |
44214094 |
T |
|
| Q |
202 |
tccgagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
261 |
Q |
| |
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|| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
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| T |
44214093 |
tctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtc |
44214034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 43463049 - 43462954
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt |
100 |
Q |
| |
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||||| |||||| ||||||| ||| | || ||||||||||| | |||||| ||| ||||||||| |||||||||||||||||| |||| |||||| |
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| T |
43463049 |
tatattagccaaaatgatgtacatttgggtgaaatgactgtaaaagaaaccatggatttctcagctagatgccaaggagttggaacacgatatggt |
43462954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 2883210 - 2883309
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt |
104 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
2883210 |
tatattagtcaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaaggtgccaaggtgtcggatcacgttatggttagt |
2883309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 2901817 - 2901717
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt |
104 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
2901817 |
tatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggcgttggatcacgttatggttagt |
2901718 |
T |
|
| Q |
105 |
c |
105 |
Q |
| |
|
| |
|
|
| T |
2901717 |
c |
2901717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 2873008 - 2873103
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggt |
100 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
2873008 |
tatattagtcaacatgatgttcatattggagaaatgactgttagggaaacattggctttctcagcaaggtgccaaggagttggatcaagatatggt |
2873103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 2901446 - 2901396
Alignment:
| Q |
211 |
tctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
261 |
Q |
| |
|
||||||||||| |||| |||||| |||||||| |||||||||||||||||| |
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|
| T |
2901446 |
tctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtc |
2901396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2883502 - 2883558
Alignment:
| Q |
205 |
gagctttctagaagagagaaggcagcaaacattaagcctgacccagatattgatgtc |
261 |
Q |
| |
|
||||| ||||||||||| |||| |||||| |||||||| ||||||||| |||||||| |
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|
| T |
2883502 |
gagctgtctagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtc |
2883558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 39359740 - 39359829
Alignment:
| Q |
18 |
atgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtcta |
107 |
Q |
| |
|
||||| |||| ||||||||||||||||| || ||||||||||| |||||||| ||| ||||||||||||| | |||||||||||||||| |
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| T |
39359740 |
atgatcttcacattggagaaatgactgttagagaaaccttggccttctcagctagagtccaaggagttggacctcgttatggttagtcta |
39359829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 39551800 - 39551713
Alignment:
| Q |
18 |
atgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtc |
105 |
Q |
| |
|
||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
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|
| T |
39551800 |
atgatcttcacattggagaaatgactgttagagaaaccttggctttctcagcaagggtccaaggagttgggcctcgttatggttagtc |
39551713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 39568647 - 39568560
Alignment:
| Q |
18 |
atgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagtc |
105 |
Q |
| |
|
||||| |||| |||||||||||||| || || ||||||||||| ||||||||| || ||||||||||||| | |||||||||||||| |
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| T |
39568647 |
atgatcttcacattggagaaatgacagtaagagaaaccttggccttctcagcacgagtccaaggagttggacctcgttatggttagtc |
39568560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39542578 - 39542498
Alignment:
| Q |
24 |
ttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttggatcacgttatggttagt |
104 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||||||| ||||| ||||| |||||||||||| | ||||||||||||| |
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| T |
39542578 |
ttcacattggagaaatgactgttagagaaaccttggccttctcggcaagggtccaaggagttgggccgcgttatggttagt |
39542498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 39345195 - 39345265
Alignment:
| Q |
18 |
atgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttgga |
88 |
Q |
| |
|
||||| |||| ||||||||| ||||||| || ||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
39345195 |
atgatcttcacattggagaattgactgttagagaaacattggccttctcggcaagagtccaaggagttgga |
39345265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 4496150 - 4496233
Alignment:
| Q |
5 |
tatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttgga |
88 |
Q |
| |
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||||| || ||| ||||||||||| |||||||||||||||| | |||||||| | ||| ||||| |||||||||||||||||| |
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| T |
4496150 |
tatattagtcaaaatgatgttcatgttggagaaatgactgtaaaagaaaccttagatttttcagctagatgccaaggagttgga |
4496233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 2152603 - 2152544
Alignment:
| Q |
29 |
attggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttgga |
88 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||| |
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|
| T |
2152603 |
attggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaaggggttgga |
2152544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 2164886 - 2164800
Alignment:
| Q |
2 |
gcttatatcagccaacatgatgttcatattggagaaatgactgtgagggaaaccttggctttctcagcaagatgccaaggagttgga |
88 |
Q |
| |
|
|||||||| || ||||||||| ||| |||||||||||||| || || |||||| | ||||||||||||||||| ||||| |||||| |
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|
| T |
2164886 |
gcttatataagtcaacatgataatcacattggagaaatgaccgtaagagaaaccctagctttctcagcaagatgtcaaggggttgga |
2164800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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