View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8216_low_2 (Length: 482)
Name: NF8216_low_2
Description: NF8216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8216_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 45313991 - 45313529
Alignment:
| Q |
1 |
aatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattattacaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313991 |
aatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattattacaaaa |
45313892 |
T |
|
| Q |
101 |
atattcaattgaataaatataatttaaacactaaacaagatagagccaa-----caaaagaatcctaaagtgacaactacaatataagctacaaaccatc |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313891 |
atattcaattgaataaatataatttaaacactaaacaagatagagccaagccaacaaaagaatcctaaagtgacaactacaatataagctacaaaccatc |
45313792 |
T |
|
| Q |
196 |
acaatatattaaacactgatccaatgaacagaacagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcagg |
295 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313791 |
acaatatattaaacactgatccaatgaatagaacaga-----ggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcagg |
45313697 |
T |
|
| Q |
296 |
ttgcactgcacaaattatcaacaattagttagctttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgtt |
395 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45313696 |
ttgcactgcacaaattatcaacaattagttagttttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgtt |
45313597 |
T |
|
| Q |
396 |
ctccgtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaa |
463 |
Q |
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| T |
45313596 |
ctccgtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaa |
45313529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 27759662 - 27759208
Alignment:
| Q |
1 |
aatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattattacaaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27759662 |
aatcactgaccgtgtataaaaataattctaagaaactaatctatgttttttcaaatttaacaagtcattactgcactacgtatgtcagattattacaaaa |
27759563 |
T |
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| Q |
101 |
atattcaattgaataaatataatttaaa-cactaaacaagatagagccaacaaaagaatcctaaagtgacaactacaatataagctacaaaccatcacaa |
199 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27759562 |
atattcaattgaataaatataatttaaaacactaaacaagatagagccaacaaaagaatcctaaagtggcaactacaatataagctacaaaccatcacaa |
27759463 |
T |
|
| Q |
200 |
tatattaaacactgatccaatgaacagaacagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgc |
299 |
Q |
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| T |
27759462 |
tttattaaacactgatccaatgaacagaacaga-----ggtgagagagatagtgacctgtagattgtcagccaacaccatagtaacatatggcaggttgc |
27759368 |
T |
|
| Q |
300 |
actgcacaaattatcaacaattagttagctttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctcc |
399 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27759367 |
actgcacaaattatcaacaattagtg----ttcatccattggtgccaaaagaaaccccttcgagtaagaaactataacatggtgagacataccgttctcc |
27759272 |
T |
|
| Q |
400 |
gtgaaattctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaa |
463 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27759271 |
gtgaagttctttccacaagcctatctagaagcacagttaataacctgactcgggcatcatgaaa |
27759208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 16927360 - 16927432
Alignment:
| Q |
117 |
atataatttaaacactaaacaagatagagccaacaaaagaatcctaaagtgacaactacaatataagctacaaa |
190 |
Q |
| |
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|||| |||| |||||||| ||||||||||||||| |||||||||||| ||| |||| |||||||||||||||| |
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| T |
16927360 |
atattattttaacactaagcaagatagagccaac-aaagaatcctaatatgataactgcaatataagctacaaa |
16927432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 16927273 - 16927336
Alignment:
| Q |
8 |
gacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattac |
71 |
Q |
| |
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||||||| ||| ||| |||| |||||| |||||||||||||| ||||||||| |||||||||| |
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| T |
16927273 |
gacagtgcatacaaataattccaagaaattaatctatgtttttccaaatttaaaaagtcattac |
16927336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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