View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8216_low_3 (Length: 399)
Name: NF8216_low_3
Description: NF8216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8216_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 1907313 - 1906931
Alignment:
| Q |
1 |
ctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1907313 |
ctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgag |
1907214 |
T |
|
| Q |
101 |
aaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctatt |
200 |
Q |
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||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1907213 |
aaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctact |
1907114 |
T |
|
| Q |
201 |
accttagcattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtgttt |
297 |
Q |
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||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
1907113 |
acctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaaggtgttt |
1907014 |
T |
|
| Q |
298 |
cataaatataaagctctgcaaaaaatgtagttttaaccaattttcttggccgaagttgttaaatagcggctatagcactacag |
380 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1907013 |
cataaatataaagcactgcgaaaaatgtagttttaaacaattttcttggccgaagttgttaaatagcggctatagcactacag |
1906931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 1903080 - 1902788
Alignment:
| Q |
1 |
ctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1903080 |
ctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgag |
1902981 |
T |
|
| Q |
101 |
aaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctatt |
200 |
Q |
| |
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||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1902980 |
aaagccagctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctact |
1902881 |
T |
|
| Q |
201 |
accttagcattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
290 |
Q |
| |
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| T |
1902880 |
acctttgcattgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1902788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 1897590 - 1897281
Alignment:
| Q |
1 |
ctaccctacctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgat---ccaacttgaatccactgactt |
97 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||| |
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| T |
1897590 |
ctaccctacttaccactaaaatgtaccatagtgaagacagaaaatagtcaactatcaggagaatgccagcaatgacatcccaacttgaatctactgactt |
1897491 |
T |
|
| Q |
98 |
gagaaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcct |
197 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
1897490 |
gagaaagccaattgattgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacctgctattgatattatgcttccc |
1897391 |
T |
|
| Q |
198 |
attaccttagcattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtg |
294 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| ||| || || |
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| T |
1897390 |
attaccttggcattactacttctactctttgcagctaacttttccatccttaattgcaatgataagaggaaacaaaataagtggacaatagactgagatg |
1897291 |
T |
|
| Q |
295 |
tttcataaat |
304 |
Q |
| |
|
|||||||||| |
|
|
| T |
1897290 |
tttcataaat |
1897281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 1912964 - 1912679
Alignment:
| Q |
9 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
108 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| | | || ||||| ||||||||| ||||||||||||||| |||||||||||| ||| |
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| T |
1912964 |
cctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggcccaacttgaatccacagacttgagaaagtcaa |
1912865 |
T |
|
| Q |
109 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
208 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1912864 |
ttggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgctattgatattatgcttccaattaccttagc |
1912765 |
T |
|
| Q |
209 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaag |
291 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||| |
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| T |
1912764 |
attactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaaataaggggacaatagactaag |
1912679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 46 - 290
Target Start/End: Complemental strand, 1892105 - 1891858
Alignment:
| Q |
46 |
agtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaattagttgatgaagtgatgagaaattcatgatcgacgg |
145 |
Q |
| |
|
|||||| | |||| ||||||||| |||| ||||||||||||||||| | ||||||||||| | |||||||||||||||| |||||||||||||||| |
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| T |
1892105 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccactgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1892006 |
T |
|
| Q |
146 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcattactacttcgac---ttgcagctaacttttccatc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||||||| |
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|
| T |
1892005 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1891906 |
T |
|
| Q |
243 |
cttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
290 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1891905 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1891858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 1879787 - 1879509
Alignment:
| Q |
9 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
108 |
Q |
| |
|
||||||| |||||||||||| |||||| ||| |||||| | | | |||| ||||||||||||| ||||||||||||| |||||||||||||| ||| |
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|
| T |
1879787 |
cctaccattaaaatgtaccaaagtgaaaacatcaaatagacgattgttagaagaatgccagcaaaagcccaacttgaatcctctgacttgagaaagtcaa |
1879688 |
T |
|
| Q |
109 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
208 |
Q |
| |
|
| ||||||||||| | || |||||||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
1879687 |
ctggttgatgaagtaaagatgaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattgagattatgcttccaattaccttagc |
1879588 |
T |
|
| Q |
209 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaata |
284 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
1879587 |
attactacttctactctttgcagctaacttttccatccttaattgcaatgataagagcaaaacaaataagtggacaata |
1879509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 1886375 - 1886127
Alignment:
| Q |
9 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||| |||| | |||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
1886375 |
cctaccagtaaaatgtaccatagtgaaaacataagatattcaactgttagaagaatgccagcaatgacccaacttgaatcaactgacttgagaaagccaa |
1886276 |
T |
|
| Q |
109 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
208 |
Q |
| |
|
|| |||||||||| |||||| ||| |||||| || ||||||||||| ||||||| ||||||||| ||| ||||||| |||||||| || | || |||||| |
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|
| T |
1886275 |
ttggttgatgaagagatgaggaatgcatgatggatggtcctttgtaaaaagtcaacacaaaagctcctactattgagattatgctccccagtatcttagc |
1886176 |
T |
|
| Q |
209 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaat |
254 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
1886175 |
attactacttctactctttgcagctaacttttccatccttaattacaat |
1886127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 27039532 - 27039637
Alignment:
| Q |
84 |
gaatccactgacttgagaaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattg |
183 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27039532 |
gaatccattgacttgagaaagccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattg |
27039631 |
T |
|
| Q |
184 |
atatta |
189 |
Q |
| |
|
| |||| |
|
|
| T |
27039632 |
agatta |
27039637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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