View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8216_low_4 (Length: 392)
Name: NF8216_low_4
Description: NF8216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8216_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 34899924 - 34899548
Alignment:
| Q |
1 |
acatctctctttagttcttctctcgctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttcctt |
100 |
Q |
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| T |
34899924 |
acatctctctttagttcttctctcgctatttgatgtcaacaaaagctaaattgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttcctt |
34899825 |
T |
|
| Q |
101 |
ccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899824 |
ccattctcaccaaacatgaaaggtatgtatcttccaactacaaaattttatgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctc |
34899725 |
T |
|
| Q |
201 |
ttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34899724 |
ttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctccta |
34899626 |
T |
|
| Q |
301 |
ataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899625 |
ataactaagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagt |
34899548 |
T |
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