View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8217_high_1 (Length: 621)
Name: NF8217_high_1
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Complemental strand, 44013452 - 44012837
Alignment:
| Q |
1 |
ctttcactcaaaatcctactctttatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctcttggtatactaaggtattcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44013452 |
ctttcactcaaaatcctactctttatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctcttggtatactaaggtattcaat |
44013353 |
T |
|
| Q |
101 |
taaataaaatcattcatcttctgatttttattttattttacctttgcatgtgaaattagttagttaaaaattagcataataagattggtaaaagggtcac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
44013352 |
taaataaaatcatttatcttctgattttaattttattttacctgtgcatgtgaaattagttagttaaaaattagcatagtaagattggtaaaaggatcac |
44013253 |
T |
|
| Q |
201 |
ataagtatggtcggtcagatggtaaaagaccacaaaaatatttgataagttaggactcggcaagtgttt-gtgaatttctctactaaactcttctgnnnn |
299 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
44013252 |
ataagtatggtcggtcagatggtaaaaaaccgcagaaacatttgataagttaggactcggcaagtgttttgtgaatttcactactagactcttctgaaaa |
44013153 |
T |
|
| Q |
300 |
nnnnnnnnnnnnnnnnnctggttactattactttatttaataataagacaattctattcagcttgaaatttgagaatttatttatggttatttattgaag |
399 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44013152 |
ggaaaaaaaatcaaaaacttgttactagtactttatttaataataagacaattctagtcaacttgaaatttgagaatttatttatggttatttattgaag |
44013053 |
T |
|
| Q |
400 |
gacattttattagttccctatgttttgtgaatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaac |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44013052 |
gacattttattagttccctatgttttgtgaatgatgaaataatcttttgaatttgtgcatgcaggctaggctttgtgattgattttctatcaaaagcaac |
44012953 |
T |
|
| Q |
500 |
cctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattatt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44012952 |
cctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggttacttggaattgtgcactttactaacaagatgcaaattatt |
44012853 |
T |
|
| Q |
600 |
cctgtattggtctctg |
615 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44012852 |
cctgtattggtctctg |
44012837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 461 - 615
Target Start/End: Original strand, 3174142 - 3174296
Alignment:
| Q |
461 |
caggctaggctttgtgattgattttctatcaaaagcaaccctggtcggttttatggccggtgctgctatcattgtgtcattgcagcaattgaaagggtta |
560 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||| |||| ||||| ||||| ||||| || |||||||||||| | || ||| | ||||||||| |
|
|
| T |
3174142 |
caggttaggctttgtgattgattttctatcaaaggcaacattggtaggtttcatggctggtgcagcaatcattgtgtcactacaacaactcaaagggtta |
3174241 |
T |
|
| Q |
561 |
cttggaattgtgcactttactaacaagatgcaaattattcctgtattggtctctg |
615 |
Q |
| |
|
|| ||||| || || || || | |||||||||||| | ||||| |||||||||| |
|
|
| T |
3174242 |
ctaggaatagttcatttcacaagcaagatgcaaatagtacctgttttggtctctg |
3174296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 3173662 - 3173732
Alignment:
| Q |
24 |
tatcttcaattggctttcactgccacttttgttgctggtttattccaagcttctcttggtatactaaggta |
94 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
3173662 |
tatcttaaattggctttcactgccactttctttgctggtttattccaatcttctcttggtgtattaaggta |
3173732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University