View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8217_high_2 (Length: 545)
Name: NF8217_high_2
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Complemental strand, 46124381 - 46123845
Alignment:
| Q |
1 |
gcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaaaacaagatccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46124381 |
gcccatgtagcaatattccatgtagatttttttgttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaaaacaatatccc |
46124282 |
T |
|
| Q |
101 |
ttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagacattgaaattgtgtaagcgatcaactcatacatagat |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46124281 |
ttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaattgtgtaagcgatcgactcatacatagat |
46124182 |
T |
|
| Q |
201 |
acatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactgccagagctcagaagcttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46124181 |
acatgcatacacgatagttttctcaaagcaattatgccacgagattgaggaagacatcacctgttctttgccgtcatcactgccagagctcagaagcttc |
46124082 |
T |
|
| Q |
301 |
acaagcagaggaacagcaccatgttcaatcacagtatttgtatgctcagacaatcccgcagtgacattgatcagagtccatgctgccatggactgcagat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46124081 |
acaagcagaggaacagcaccatgttcaatcacagtatttgtatgttcagacaatcccgcagtgacattgatcagagtccatgctgccatggactgcagat |
46123982 |
T |
|
| Q |
401 |
ataatattgtacaacatattttgtgagtgaggtcaaaatcattacattcaggaatcacttgatagaaaaagattcatacctgcaattggggcatatcatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46123981 |
ataatattgtacaacatattttgtgagtgaggtcaaaatcattacattcaggaatcacttgatagaaaaagattcatacctgcaattggggcatatcatc |
46123882 |
T |
|
| Q |
501 |
ccttgtcaaaaactgcacaaaccgcgggacaacacca |
537 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46123881 |
ccttgtcaaaaactgcacaaaccgcaggacaacacca |
46123845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 34 - 534
Target Start/End: Complemental strand, 46130357 - 46129870
Alignment:
| Q |
34 |
gttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattaccta |
133 |
Q |
| |
|
|||| |||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||| | || ||| ||| | |||||||||||||||| |
|
|
| T |
46130357 |
gttgcagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaaaacaacatccttcgcggtctcagaactaccagcaatattaccta |
46130258 |
T |
|
| Q |
134 |
atgcccataatgcctgatcaatacatgagacattgaaattgtgtaagcgatcaactcatacatagatacatgcatacacgatagttttctcaaagcaatt |
233 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130257 |
atgcccataatgcctgttcaatacatgagacattgaaattgtgtaagcgatcgactcatacatagatacatgcatacacgatagttttctcaaagcaatt |
46130158 |
T |
|
| Q |
234 |
atgccacgagattgaggaagacatcacctgttctttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcaca |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46130157 |
atgccacgagattgaggaagacatcacctgttctttgccgtcatcactaccagagctcagaagcttcacaaggagaggaacagcaccatgttcaatcaca |
46130058 |
T |
|
| Q |
334 |
gtatttgtatgctcagacaatcccgcagtgacattgatcagagtccatgctgccatggactgcagatataatattgtacaacatattttgtgagtgaggt |
433 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46130057 |
gtatttgtatgctcagacaatcccgcggtgacattgatcagagtccatgctgccatggactgcagatataata-------------tttgtgagtgaggt |
46129971 |
T |
|
| Q |
434 |
caaaatcattacattcaggaatcacttgatagaaaaagattcatacctgcaattggggcatatcatcccttgtcaaaaactgcacaaaccgcgggacaac |
533 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||| |
|
|
| T |
46129970 |
caaaatcatctcattcaggaattacttgatagaaaaatattcatacctgcagttggggcatatcatcccttttcaaaaactgcacaaatcgccggacaac |
46129871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 39 - 534
Target Start/End: Complemental strand, 46703136 - 46702654
Alignment:
| Q |
39 |
agaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattacctaatgcc |
138 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46703136 |
agaaggattccacaacagagacaataatggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcc |
46703037 |
T |
|
| Q |
139 |
cataatgcctgatcaatacatgagacattgaaattgtgtaagcgatcaactcatacatagatacatgcatacacgatagttttctcaaagcaattatgcc |
238 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
46703036 |
cataatgcctgttcaatacatgagacattgaaattctgtaagggatcaacacatacatagatacatgcatacacaatggttttctcaatgcaattatgcc |
46702937 |
T |
|
| Q |
239 |
acgagattgaggaagacatcacctgttctttgccgtcatcactgccagagctcagaagcttcacaagcagaggaacagcaccatgttcaatcacagtatt |
338 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46702936 |
aagagattgaagaagacatcacctgttctttgccgtcatcacaaccagagctcagaagctgcacaagcagaggaacagcaccatgttcaatcacagtatt |
46702837 |
T |
|
| Q |
339 |
tgtatgctcagacaatcccgcagtgacattgatcagagtccatgctgccatggactgcagatataatattgtacaacatattttgtgagtgaggtcaaaa |
438 |
Q |
| |
|
||||||||||||||||||||| | || |||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
46702836 |
tgtatgctcagacaatcccgccgcgatattggtcagtgtccatgctgccatggactgcagatataata-------------tctgtgagtgaggtcaaaa |
46702750 |
T |
|
| Q |
439 |
tcattacattcaggaatcacttgatagaaaaagattcatacctgcaattggggcatatcatcccttgtcaaaaactgcacaaaccgcgggacaaca |
534 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46702749 |
tcatctcattcaggaattacttgatagaaaaagattcatacctgcagttggggcatatcatcccttgtcaaaaactgcacaaaccgcgggacaaca |
46702654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University