View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8217_low_11 (Length: 239)
Name: NF8217_low_11
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_low_11 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1164690 - 1164451
Alignment:
| Q |
1 |
acattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcat |
100 |
Q |
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| T |
1164690 |
acattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcat |
1164591 |
T |
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| Q |
101 |
ctttagttgcttctatttaggtctacattaatctctcttaatctttattaatatcatgttttcttgttgattagtttatatcatttggaaatgtaggatg |
200 |
Q |
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| T |
1164590 |
ctttagttgcttctatttaggtctacattaatctctcttagtctttattaatatcatgttttcttattgattagtttatatcatttggaaatgtagtatg |
1164491 |
T |
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| Q |
201 |
ttatgactagtttagtttca-ttctagttgcttctattta |
239 |
Q |
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| T |
1164490 |
ttatgactagtttagtttcatttctagttgcttctattta |
1164451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1148523 - 1148456
Alignment:
| Q |
1 |
acattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagac |
68 |
Q |
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| T |
1148523 |
acattatctgcagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggctttagac |
1148456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 1172078 - 1171928
Alignment:
| Q |
1 |
acattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacaca-tggtttcacttccacaagttaaatttca |
99 |
Q |
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| T |
1172078 |
acattatctgcatggcctcattttagtgtctccacattgattttgtgtttgagtttttggctttaaacacatttgtttcacttctagtagtttagtttca |
1171979 |
T |
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| Q |
100 |
tctttagttgcttctatttaggtctacattaat-ctctcttaatctttatt |
149 |
Q |
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| T |
1171978 |
tttttagttgctattatttagacctacattaatccactcttagtctttatt |
1171928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 1137101 - 1137012
Alignment:
| Q |
2 |
cattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagtt |
91 |
Q |
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| T |
1137101 |
cattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagtt |
1137012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 1181326 - 1181255
Alignment:
| Q |
1 |
acattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacat |
72 |
Q |
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| T |
1181326 |
acattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttgagcttttggctttaaacacat |
1181255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 1141755 - 1141666
Alignment:
| Q |
2 |
cattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagtt |
91 |
Q |
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| T |
1141755 |
cattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccactagtt |
1141666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 1160124 - 1160009
Alignment:
| Q |
18 |
tcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcatctttagttgcttctatt |
117 |
Q |
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| T |
1160124 |
tcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtttagttgcttctgtt |
1160025 |
T |
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| Q |
118 |
taggtctacattaatc |
133 |
Q |
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| T |
1160024 |
taggcctatattaatc |
1160009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 1171901 - 1171852
Alignment:
| Q |
147 |
attaatatcatgttttcttgttgattagtttatatcatttggaaatgtag |
196 |
Q |
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| T |
1171901 |
attaatatcatgttctcttgttgatttgtttgtgtcatttgtaaatgtag |
1171852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 1145266 - 1145198
Alignment:
| Q |
17 |
ctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttcca |
85 |
Q |
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| T |
1145266 |
ctcattttggtgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttcca |
1145198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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