View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8217_low_4 (Length: 429)

Name: NF8217_low_4
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8217_low_4
NF8217_low_4
[»] chr7 (4 HSPs)
chr7 (18-429)||(46124207-46124627)
chr7 (29-427)||(46703002-46703407)
chr7 (144-429)||(46130216-46130501)
chr7 (29-87)||(46130534-46130592)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 46124627 - 46124207
Alignment:
Q  18 agtataacttcttcatcaggcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaaga 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46124627 agtataacttcttcatcaggcatcaataagagctcctgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaaga 46124528  T
Q  118 gaagataacaaacaatgtgtaaattcatta---------atttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctg 208  Q
    ||||||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46124527 gaagataacaaacaatgtgtaaattcattatatttattaatttatataggatatgctaaatttactgcacatgctatccttgcaaatttttcccaacctg 46124428  T
Q  209 atcctgaagagttagaagaggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatc 308  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  46124427 attctgaagagttagaagaggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagatttttttgttgaagaaggattccacatc 46124328  T
Q  309 aaagacaatagtggagaaagtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaa 408  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46124327 aaagacaatagtggagaaagtgcaccatgatttaaaacaatatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaa 46124228  T
Q  409 tacatgagacattgaaattgt 429  Q
    |||||||||||||||||||||    
T  46124227 tacatgagacattgaaattgt 46124207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 46703407 - 46703002
Alignment:
Q  29 ttcatcaggcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaagataacaggagagcatgcagttggagaagagaagataacaa 128  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  46703407 ttcatcaggcatcaataagagttcccgaaggccagacaatgctggtaagatctgaaaaggataacaggagagcatgcagttggagaagagaaattaacaa 46703308  T
Q  129 a-caatgtgtaaattcatta---------atttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctgatcctgaaga 218  Q
    | |||||| |||||||||||         | ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  46703307 aacaatgtctaaattcattatatttatgaaattatataggatatgctaaatttactgcacatgctatccttgcaaagttttcccaacctgatcctcaaga 46703208  T
Q  219 gttagaagaggctttccgcgagtgaagttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaata 318  Q
    |||||| |||||||| | ||| | | ||||| |||||||||| |||||||  ||||||||||        ||| |||||||||||||| || ||||||||    
T  46703207 gttagaggaggcttttcacgaataatgttgacaaaagcccatatagcaatcctccatgtagattttt---ttgtagaaggattccacaacagagacaata 46703111  T
Q  319 gtggagaaagtgcaccatgatttaaaacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagac 418  Q
     ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46703110 atggagaaagtgcaccattatttaaaacaagatcccttgcggtcagggaattgccagcaatattacctaatgcccataatgcctgttcaatacatgagac 46703011  T
Q  419 attgaaatt 427  Q
    |||||||||    
T  46703010 attgaaatt 46703002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 144 - 429
Target Start/End: Complemental strand, 46130501 - 46130216
Alignment:
Q  144 attaatttatagaggatatgctaaatttactgcacatgctatccgtgcaaatttttcccaacctgatcctgaagagttagaagaggctttccgcgagtga 243  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||  || |||| ||  || | |    
T  46130501 attaaattatataggatatgctaaatttactgcacatgctatccttgcaaacttttcccaacctgatcctcaagagttagtggaagcttcccaggaataa 46130402  T
Q  244 agttgaaaaaagcccatgtagcaatattccatgtagannnnnnngttgaagaaggattccacatcaaagacaatagtggagaaagtgcaccatgatttaa 343  Q
     ||||  |||||||||| |||||||  ||||||||||       |||| |||||||||||||| || |||||||| ||||| ||||||||||||||||||    
T  46130401 cgttggcaaaagcccatatagcaatcctccatgtagatttttctgttgcagaaggattccacaacagagacaataatggaggaagtgcaccatgatttaa 46130302  T
Q  344 aacaagatcccttgcagtcagggaattgccagcaatattacctaatgcccataatgcctgatcaatacatgagacattgaaattgt 429  Q
    ||||| |||| | || |||   ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46130301 aacaacatccttcgcggtctcagaactaccagcaatattacctaatgcccataatgcctgttcaatacatgagacattgaaattgt 46130216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 46130592 - 46130534
Alignment:
Q  29 ttcatcaggcatcaataagagctcccgaaggccagacaatgctggtagcatctgaaaaa 87  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||  ||||||||||    
T  46130592 ttcatcaggcatcaataagagttcccgaaggccaggcaatgctggtaagatctgaaaaa 46130534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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