View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8217_low_6 (Length: 347)

Name: NF8217_low_6
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8217_low_6
NF8217_low_6
[»] chr6 (22 HSPs)
chr6 (19-339)||(4597981-4598301)
chr6 (96-329)||(4579319-4579552)
chr6 (83-339)||(4574182-4574438)
chr6 (154-340)||(4560451-4560637)
chr6 (204-331)||(4585631-4585758)
chr6 (200-333)||(4613726-4613859)
chr6 (204-333)||(4557120-4557249)
chr6 (215-339)||(4570978-4571102)
chr6 (215-333)||(4504405-4504523)
chr6 (200-333)||(4592222-4592355)
chr6 (213-333)||(3171745-3171865)
chr6 (206-333)||(4563708-4563835)
chr6 (213-333)||(4480697-4480817)
chr6 (224-339)||(4516336-4516451)
chr6 (213-339)||(4617026-4617152)
chr6 (228-333)||(4490363-4490468)
chr6 (204-291)||(4606941-4607028)
chr6 (213-274)||(4505861-4505922)
chr6 (213-333)||(4515129-4515249)
chr6 (213-331)||(4461127-4461245)
chr6 (213-339)||(4601793-4601919)
chr6 (213-265)||(4492959-4493011)
[»] chr8 (3 HSPs)
chr8 (200-322)||(20863862-20863984)
chr8 (204-333)||(16686275-16686404)
chr8 (213-331)||(1674230-1674348)
[»] chr3 (1 HSPs)
chr3 (213-337)||(1281118-1281242)
[»] scaffold0477 (1 HSPs)
scaffold0477 (225-339)||(4688-4802)
[»] chr5 (1 HSPs)
chr5 (213-331)||(28000109-28000227)
[»] chr7 (1 HSPs)
chr7 (215-265)||(3086426-3086476)
[»] scaffold0288 (1 HSPs)
scaffold0288 (213-333)||(3727-3847)


Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-172; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 4597981 - 4598301
Alignment:
Q  19 agaggtatgtaatgtaatctttaaatgtgaacttatgaataatggacttgatgaagctgcatgcatgcatcattgcaatgttcctgactaaaatgttgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4597981 agaggtatgtaatgtaatctttaaatgtgaacttatgaataatggacttgaggaagctgcatgcatgcatcattgcaatgttcctgactaaaatgttgat 4598080  T
Q  119 gctcacactttagaatataggttaacaaaaagtaaaaattatttgatcctaacaaaactataaatattttattaaagttaattaagtttgattctgttta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4598081 gctcacactttagaatataggttaacaaaaagtaaaaattatttgatcctaataaaactataaatattttattaaagttaattaagtttgattctgttta 4598180  T
Q  219 agaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttttgcc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4598181 agaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcc 4598280  T
Q  319 tcattttctttccttcatctc 339  Q
    ||||||||||||||| |||||    
T  4598281 tcattttctttcctttatctc 4598301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 96 - 329
Target Start/End: Original strand, 4579319 - 4579552
Alignment:
Q  96 atgttcctgactaaaatgttgatgctcacactttagaatataggttaacaaaaagtaaaaattatttgatcctaacaaaactataaatattttattaaag 195  Q
    |||||||||||||||||||||||   ||||||| |||| ||||||  ||| ||| |  |||||||||| ||| |||||||||||||| ||  ||  ||||    
T  4579319 atgttcctgactaaaatgttgatatccacacttaagaacataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaatcgtacaaaag 4579418  T
Q  196 ttaattaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcat 295  Q
    | | ||||||| |||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| | ||||||||| ||||| |    
T  4579419 tcacttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttctt 4579518  T
Q  296 cttcaaatcaattgtcttttgcctcattttcttt 329  Q
    |||||| ||||||| |||||||||||| ||||||    
T  4579519 cttcaactcaattgccttttgcctcatcttcttt 4579552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 339
Target Start/End: Original strand, 4574182 - 4574438
Alignment:
Q  83 atgcatcattgcaatgttcctgactaaaatgttgatgctcacactttagaatataggttaacaaaaagtaaaaattatttgatcctaacaaaactataaa 182  Q
    |||||||||| ||||||| ||||||||| |||||||| ||| |||| |||| |||||   ||  ||| ||  ||||||||| |||||||||||||||| |    
T  4574182 atgcatcattacaatgtttctgactaaattgttgatgttcatacttaagaacataggaagacctaaaatatgaattatttgttcctaacaaaactatata 4574281  T
Q  183 tattttattaaagttaattaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcct 282  Q
    |||| ||| ||||| | ||||| |||||| |||||||| ||||||||||||||||||||||| |||||  ||||||||||||||||| ||||| | |||     
T  4574282 tattgtataaaagtgacttaagcttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtcca 4574381  T
Q  283 cctccgccttcatcttcaaatcaattgtcttttgcctcattttctttccttcatctc 339  Q
    ||||| ||||| ||||||  ||||| |  ||||||||||| |||||||||| |||||    
T  4574382 cctccaccttcttcttcagctcaatggctttttgcctcatcttctttcctttatctc 4574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 154 - 340
Target Start/End: Original strand, 4560451 - 4560637
Alignment:
Q  154 aaattatttgatcctaacaaaactataaatattttattaaagttaattaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcat 253  Q
    |||| ||||| |||||||||||||||| ||||| ||| ||||| | ||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  4560451 aaatgatttgttcctaacaaaactatatatattgtataaaagtaacttatgtttgattttgtttaagcaacacctccttaatcactttctccaagttcat 4560550  T
Q  254 gtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattttctttccttcatctca 340  Q
    |||||||||||||||| ||||| | | | ||||||||||  ||||||  || || | |||||||||||| |||||||||| ||||||    
T  4560551 gtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttctttcctttatctca 4560637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 331
Target Start/End: Original strand, 4585631 - 4585758
Alignment:
Q  204 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaat 303  Q
    |||||||| | |||||| || ||||||||||||||||| || ||||| |||||||||||||||||| ||||| | ||||||||||||||| ||||||| |    
T  4585631 gtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaact 4585730  T
Q  304 caattgtcttttgcctcattttctttcc 331  Q
    | |||| |||||||||||| ||||||||    
T  4585731 cgattgccttttgcctcatcttctttcc 4585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 200 - 333
Target Start/End: Complemental strand, 4613859 - 4613726
Alignment:
Q  200 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttc 299  Q
    |||||||||||| ||||| || | |||||| || |||||||| || |||||||| ||||||||||||||  ||||| | |||||||| |||||| |||||    
T  4613859 ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc 4613760  T
Q  300 aaatcaattgtcttttgcctcattttctttcctt 333  Q
    || ||||||| |||||||||||||||||||||||    
T  4613759 aactcaattgccttttgcctcattttctttcctt 4613726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 333
Target Start/End: Original strand, 4557120 - 4557249
Alignment:
Q  204 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaat 303  Q
    |||||||| |||||||| || ||||||||||||||||| || || ||||||||||||||||| ||| ||||| | ||||||||||||||| ||||||  |    
T  4557120 gtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatct 4557219  T
Q  304 caattgtcttttgcctcattttctttcctt 333  Q
    ||||| |||||| || ||| ||||||||||    
T  4557220 caattatctttttccacatcttctttcctt 4557249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 215 - 339
Target Start/End: Original strand, 4570978 - 4571102
Alignment:
Q  215 tttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttt 314  Q
    |||||| || ||||||||||||||||| || |||||||||||||||||||| ||| ||||| | ||||||||||||||| ||||||  || ||| | |||    
T  4570978 tttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatattt 4571077  T
Q  315 tgcctcattttctttccttcatctc 339  Q
    | |||||| |||||||||| |||||    
T  4571078 ttcctcatcttctttcctttatctc 4571102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 333
Target Start/End: Complemental strand, 4504523 - 4504405
Alignment:
Q  215 tttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttt 314  Q
    |||||| || || |||||||||||||| || |||||||||||||||||||| ||||||||  | |||||||| |||||| ||||||| || || | ||||    
T  4504523 tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt 4504424  T
Q  315 tgcctcattttctttcctt 333  Q
    |||||||| ||||||||||    
T  4504423 tgcctcatcttctttcctt 4504405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 200 - 333
Target Start/End: Original strand, 4592222 - 4592355
Alignment:
Q  200 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttc 299  Q
    |||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| ||||| | | |||||| |||||| |||||    
T  4592222 ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttc 4592321  T
Q  300 aaatcaattgtcttttgcctcattttctttcctt 333  Q
    || || |||| ||||| |||||| ||||||||||    
T  4592322 aactcgattgcctttttcctcatcttctttcctt 4592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 333
Target Start/End: Original strand, 3171745 - 3171865
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| || ||||||||||||||||| || |||||||||||||||||||| |||| |||  | |||||||| |||||| ||||||| || || | |     
T  3171745 tgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccc 3171844  T
Q  313 tttgcctcattttctttcctt 333  Q
    |||||||||| ||||||||||    
T  3171845 tttgcctcatcttctttcctt 3171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 206 - 333
Target Start/End: Original strand, 4563708 - 4563835
Alignment:
Q  206 ttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatca 305  Q
    |||||| |||||||| || |||||||| |||||||| || ||||||||||||||||||||||||  |||| | |  |||||| | ||| ||||||| |||    
T  4563708 ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca 4563807  T
Q  306 attgtcttttgcctcattttctttcctt 333  Q
    |||| |||||||| ||| ||||||||||    
T  4563808 attgccttttgccgcatcttctttcctt 4563835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 333
Target Start/End: Original strand, 4480697 - 4480817
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| || ||||||||||||||||| || |||||||||||||||||||| ||| ||||  | |||||||| ||| || ||||||| || || | ||    
T  4480697 tgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggcct 4480796  T
Q  313 tttgcctcattttctttcctt 333  Q
    ||||| |||| ||||||||||    
T  4480797 tttgcttcatcttctttcctt 4480817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 339
Target Start/End: Original strand, 4516336 - 4516451
Alignment:
Q  224 cacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttttgcctcatt 323  Q
    |||||||||||||||||| || |||||||  ||||||||||| ||  ||||  | |||||||| |||||| ||||||| || || | ||||||||||||     
T  4516336 cacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcctcatc 4516435  T
Q  324 ttctttccttcatctc 339  Q
    |||||||||| |||||    
T  4516436 ttctttcctttatctc 4516451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 4617026 - 4617152
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| ||||| |||||||| ||||| |  |||||||||||||||||||| ||  ||||  | | |||||| |||||| ||||||| || || | ||    
T  4617026 tgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggcct 4617125  T
Q  313 tttgcctcattttctttccttcatctc 339  Q
    ||||| ||||||||||||||| |||||    
T  4617126 tttgcttcattttctttcctttatctc 4617152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 4490468 - 4490363
Alignment:
Q  228 tccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattttct 327  Q
    |||||||||||||| || |||||||||||||||| ||| || |||||| | |||||| | |||||| ||||||| ||  | | |||||||||||| ||||    
T  4490468 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 4490369  T
Q  328 ttcctt 333  Q
    ||||||    
T  4490368 ttcctt 4490363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 4607028 - 4606941
Alignment:
Q  204 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgcct 291  Q
    |||||||| |||||||| || |||| |||||||||||| || ||||||||||||||| |||| ||  ||||| | ||| |||||||||    
T  4607028 gtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctccgcct 4606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 4505861 - 4505922
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtct 274  Q
    |||||||| |||||||||||||| ||||| || ||||||||| |||||||||| ||| ||||    
T  4505861 tgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtct 4505922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 4515249 - 4515129
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| ||||||||||| |||||||| || ||||||| ||||||| | || ||||||||  | ||||| || |||||| | ||||| || ||   ||    
T  4515249 tgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacct 4515150  T
Q  313 tttgcctcattttctttcctt 333  Q
    ||| ||||||||| |||||||    
T  4515149 ttttcctcattttatttcctt 4515129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 4461127 - 4461245
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| || || |||||||| ||||| || |||||| ||||||||  ||||||| ||||  | ||||||||| ||||| |||| || || ||   ||    
T  4461127 tgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgacct 4461226  T
Q  313 tttgcctcattttctttcc 331  Q
    |||||||||| ||||||||    
T  4461227 tttgcctcatcttctttcc 4461245  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 339
Target Start/End: Original strand, 4601793 - 4601919
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| |||||||||||||| ||||| || | |||| ||||||||||||| || |||||  |   |||||  ||| || ||||||| || || | ||    
T  4601793 tgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggcct 4601892  T
Q  313 tttgcctcattttctttccttcatctc 339  Q
    |||||||||| ||||| |||| |||||    
T  4601893 tttgcctcatcttcttgcctttatctc 4601919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 4492959 - 4493011
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacc 265  Q
    |||||||| || || ||||| |||||||| || ||||||||||||||||||||    
T  4492959 tgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaacc 4493011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 20863984 - 20863862
Alignment:
Q  200 ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttc 299  Q
    |||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||||||| |||| |  ||||  | |||||||| |||||| |||||    
T  20863984 ttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttc 20863885  T
Q  300 aaatcaattgtcttttgcctcat 322  Q
    || ||| ||||||||||||||||    
T  20863884 aactcatttgtcttttgcctcat 20863862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 16686404 - 16686275
Alignment:
Q  204 gtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaat 303  Q
    |||||||| |||||||| || |||||| |||||||||| || |||||||||||||||||||| ||| |||||   || || ||| ||||||| | ||  |    
T  16686404 gtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccaccttcatttgcagtt 16686305  T
Q  304 caattgtcttttgcctcattttctttcctt 333  Q
    ||||| |||||| |||||| ||||||||||    
T  16686304 caattatctttttcctcatcttctttcctt 16686275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 331
Target Start/End: Original strand, 1674230 - 1674348
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||  ||||  | | |||||| |||||| ||||||| || || | ||    
T  1674230 tgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggcct 1674329  T
Q  313 tttgcctcattttctttcc 331  Q
    |||||||||| || |||||    
T  1674330 tttgcctcatcttttttcc 1674348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 337
Target Start/End: Original strand, 1281118 - 1281242
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| ||||  |||||||||||||| || |||||||||||||||||||| ||  ||||  | | ||||||||||  | ||||||| || || | ||    
T  1281118 tgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggcct 1281217  T
Q  313 tttgcctcattttctttccttcatc 337  Q
    |||  ||||| ||||||||||||||    
T  1281218 tttctctcatattctttccttcatc 1281242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 4802 - 4688
Alignment:
Q  225 acctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattt 324  Q
    ||||||||||||||||| || ||||||||||||||||| || |||   ||  | | |||||| |||||| ||||||| || || | |||||||||||| |    
T  4802 acctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgcctcatct 4703  T
Q  325 tctttccttcatctc 339  Q
    || |||||| |||||    
T  4702 tcattcctttatctc 4688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 28000227 - 28000109
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||  ||||| |||||||||||||| || |||||||||||||||||||| ||  ||||  | | |||||| |||||  ||||||| || || | ||    
T  28000227 tgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggcct 28000128  T
Q  313 tttgcctcattttctttcc 331  Q
    |||||||||| || |||||    
T  28000127 tttgcctcatcttttttcc 28000109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 265
Target Start/End: Original strand, 3086426 - 3086476
Alignment:
Q  215 tttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacc 265  Q
    |||||| || ||||||||||| ||||| || ||||||||||||||||||||    
T  3086426 tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaacc 3086476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 3847 - 3727
Alignment:
Q  213 tgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcatttcctcctccgccttcatcttcaaatcaattgtct 312  Q
    |||||||| || ||||||||||| ||||| || | |||||||||||||| ||| ||  ||||  | | |||||| |||||| |||| || || |  | ||    
T  3847 tgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcct 3748  T
Q  313 tttgcctcattttctttcctt 333  Q
    |||||||||| ||||||||||    
T  3747 tttgcctcatcttctttcctt 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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