View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8217_low_7 (Length: 307)
Name: NF8217_low_7
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 38921016 - 38920735
Alignment:
| Q |
18 |
ttaaaaatccacaattttttacatactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtctgtctatctcta |
117 |
Q |
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| T |
38921016 |
ttaaaaatccacaattttttacatactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtctgtctatctcta |
38920917 |
T |
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| Q |
118 |
taatctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataa---ataacttattcatacctcannnnnnn |
214 |
Q |
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| T |
38920916 |
taatctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataataacttattcatacctcattttttt |
38920817 |
T |
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| Q |
215 |
acatggattgttgagaatccacttatctccggcccgaagaacgttgtgtagatccaattgaaacgcgtttgtgcaggttcat |
296 |
Q |
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| T |
38920816 |
acatggattgttgagaatccacttatctccggcccgaagaacatcgtgtagatccaattgaaacgcgtttgtgcaggttcat |
38920735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 10544869 - 10544653
Alignment:
| Q |
40 |
atactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtctgtctatctctataatctacttaaacaagcatcc |
139 |
Q |
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| T |
10544869 |
atactcaaacaagcattaaaattttagttcctatgggtaccaccagcttagcttaatgccactgcctgtctatctctataacctactaaaacatgcatcc |
10544770 |
T |
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| Q |
140 |
agatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataacttattcatacctcannnnnnnacatggattgttgagaatccactta |
239 |
Q |
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| T |
10544769 |
agatgacttcataacaaacaaatgtttatggtcggaaaattaacaataaataacttattcatacctca-ttttttacatggattgttgagaatccac-ca |
10544672 |
T |
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| Q |
240 |
tctccggcccgaagaacgt |
258 |
Q |
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|||||||||| ||||||| |
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| T |
10544671 |
cctccggcccgtagaacgt |
10544653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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