View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8217_low_8 (Length: 255)
Name: NF8217_low_8
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25351146 - 25350904
Alignment:
| Q |
1 |
tatccgtgcttcattttcctataatttaatgtatagtattattttatctatcctttctaagcatatataaaaatttctgcatgcagggtttatagggaag |
100 |
Q |
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| T |
25351146 |
tatccgtgcttcattttcctataatttaatgtatagtattattttctctatcctttctaagcatatataaaaatttctgcatgcagggtttatagggaag |
25351047 |
T |
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| Q |
101 |
caatttatttgaagtcagtgtcagtaatatgggatcatccagaacaataaactcaggctagtgattcatatttgttgttttaagctttctcaaaatgaca |
200 |
Q |
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| T |
25351046 |
caatttatttgaagtcagtgtcagtaatatgggatcatccagaacaataaactcaggctagtaattcatatttgttgttttaagctttctcaaaatgaca |
25350947 |
T |
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| Q |
201 |
ctttcttagttatcacttgcttattgttttttagatgcaattg |
243 |
Q |
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| T |
25350946 |
ttttcttagttatcacttgcttattgttttttagatgcaattg |
25350904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 25356162 - 25356091
Alignment:
| Q |
127 |
atatgggatcatccagaacaataaactcaggctagtgattcatatttgttgttttaagctttctcaaaatga |
198 |
Q |
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| T |
25356162 |
atatgggatcgtccggaacaataaactcaggttagtgattcgtaattgtagttttaagtttcctcaaaatga |
25356091 |
T |
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