View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8217_low_9 (Length: 253)
Name: NF8217_low_9
Description: NF8217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8217_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 2348081 - 2348312
Alignment:
| Q |
11 |
gtgttaagccaagtttgaggccactatccatggccatgtctac-----ccattcatctctttggagatgtgccttcctcacctcttgtcagagttctcca |
105 |
Q |
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| T |
2348081 |
gtgttaaaccaagtttgaggccactatccatggccatgtctactgttgccattcatctctttggagatgtgccttcctcacctcttgtcggagttctcca |
2348180 |
T |
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| Q |
106 |
ggtcagccttttacagatnnnnnnngccccacattcacagacacagacaccaattgcagtttttattcatttccataactttgttttggaaattattttg |
205 |
Q |
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| T |
2348181 |
ggtcagccttttacagatcccccccgccccacattcacagacacagacaccaattgcagtttttattcatttccataactttgttttggaaattattttg |
2348280 |
T |
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| Q |
206 |
ccaacggttctagtaaacgcatggcgtctttt |
237 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2348281 |
ccaacggttctagtaaacgcatggcgtctttt |
2348312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 2340207 - 2340320
Alignment:
| Q |
11 |
gtgttaagccaagtttgaggccactatccatggccatgtctac-----ccattcatctctttggagatgtgccttcctcacctcttgtcagagttctcca |
105 |
Q |
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||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2340207 |
gtgttaaaccaagtttgaggcctttatccatcgccatgtctactgttgccattcatctctttggagatgtgccttcctcaccacttgttggagttctcca |
2340306 |
T |
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| Q |
106 |
ggtcagccttttac |
119 |
Q |
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|||||||||||||| |
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| T |
2340307 |
ggtcagccttttac |
2340320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 36794459 - 36794348
Alignment:
| Q |
11 |
gtgttaagccaagtttgaggccactatccatggccatgtctac-----ccattcatctctttggagatgtgccttcctcacctcttgtcagagttctcca |
105 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||| | |||||| | || |||||||| |||||| | |||||||| ||||| |||| |
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| T |
36794459 |
gtgttaagccaagtttgaggccactatcaatggctatgtctactgtagctattcatattttcggagatgtaccttccgcgcctcttgttggagttgtcca |
36794360 |
T |
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| Q |
106 |
ggtcagcctttt |
117 |
Q |
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||| ||| |||| |
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| T |
36794359 |
ggttagcatttt |
36794348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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