View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8218_high_1 (Length: 350)
Name: NF8218_high_1
Description: NF8218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8218_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 39757480 - 39757307
Alignment:
| Q |
1 |
caaaattattctgatcacgtaccacattatttaaaacataatacatgggaaccaaaattgaaatttaagcatgaaaattattattacgaactataattaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39757480 |
caaaattattctgatcac-taccacattatttaaaacataatacatgggaaccaaaattgaaatttaagcatgaaaattattattacgaactataattaa |
39757382 |
T |
|
| Q |
101 |
aatatgatatcatgttaaatatcgaaattgagtttaatctcattggtttactaattcgatagtttatatatttac |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39757381 |
aatatgatatcatgttaaatatcgaaattgagtttaatctcattggtttactaattcgatagtttatatatttac |
39757307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 39757049 - 39756977
Alignment:
| Q |
258 |
taagcttatgacaaactatatagaccttaaagttttttaagagaccaaacttgagcctcacatggctttgttt |
330 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39757049 |
taagcttatgacaaactatatagaacttaaagttttttaagagaccaaacttgagcctcacatggctttgttt |
39756977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University