View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8218_high_2 (Length: 320)
Name: NF8218_high_2
Description: NF8218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8218_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 306
Target Start/End: Original strand, 40105276 - 40105575
Alignment:
| Q |
7 |
gaagcacagaaatactaaaccggtaaaacaaactttaccggaggtcctcaaccgtctcgcatccaccatccttttcccggacccggacgacggaacttcc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40105276 |
gaagcacagaaatactaaaccggtaaaacaaactttaccggaggtcctcaaccgtctcgcatccaccatccttttcccggacccggccgacggaacttcc |
40105375 |
T |
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| Q |
107 |
ttacttcgccggatcaaaaactctgtcgcggataacgctcctctcattccagaagcttctagaaactccgccaacgatgttctcgtatggactcgccgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40105376 |
ttacttcgccggatcaaaaactctgtcgcggataacgctcctctcattccagaagcttctagaaactctgccaacgatgttctcgtatggactcgccgtg |
40105475 |
T |
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| Q |
207 |
gaagtcccctccgcgctctcctcgttatctctgtaaggaaaaagtctattacgtcttgttgatttgattgaatcgagttttctcactgtttgaagaatct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40105476 |
gaagtcccctccgcgctctcctcgttatctctgtaaggaaaaagtctattacgtcttgttgatttgattgaatcgagttttctcactgtttgaagaatct |
40105575 |
T |
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