View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8219_low_2 (Length: 485)
Name: NF8219_low_2
Description: NF8219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8219_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 38664609 - 38664840
Alignment:
| Q |
12 |
atattattctataaacaaataaaaaaccttattaatttcttttggtgtgcgtaaacaacctttaaacacaattnnnnnnnnggaggttgtatttcttttg |
111 |
Q |
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| T |
38664609 |
atattattctataaacaaataaaaaaccttattaatttcttttggtgtgcgtaaacaacctttaaacacaattaaaaaaaaggaggttgtatttcttttg |
38664708 |
T |
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| Q |
112 |
gtttgtacgaaatgaaaaataatactacatgaaaactcacacacgaaatgaaaagccttattaatttcttcaagcccccttgattttaagtagatcaacg |
211 |
Q |
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| T |
38664709 |
gtttgtacgaaatgaaaaataatactacatgaaaactcgcacacgaaataaaaagccttattaatttcttcaaaccctcttgattttgactggatcaacg |
38664808 |
T |
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| Q |
212 |
cttacgtggctcctaattgaacatcacgtagg |
243 |
Q |
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| T |
38664809 |
cttacgtggctcctaattggacatcacgtagg |
38664840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 313 - 468
Target Start/End: Original strand, 38664914 - 38665069
Alignment:
| Q |
313 |
ggaatggcacgtgagatcatcatgttcttgtttatcttcttcacccaacacctccatattttattgatgttgtgtttctttctgattcagaaacacttga |
412 |
Q |
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| T |
38664914 |
ggaatggcacgtgagatcatcatgttcttgttcaacttcttcacccaacacctccatattttattgatgttgtgtttctttctgattcagaaacacttga |
38665013 |
T |
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| Q |
413 |
agctggataatgatgttgagctctatgctttgggaactacttccaactatcatcat |
468 |
Q |
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| T |
38665014 |
agctggataatgatgttgagctctatgctttgggaactacttccaactatcatcat |
38665069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 38665405 - 38665348
Alignment:
| Q |
186 |
cccccttgattttaagtagatcaacgcttacgtggctcctaattgaacatcacgtagg |
243 |
Q |
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| T |
38665405 |
cccccttgattttgactggatcaacgcttacgtggctcctagctggacaccacgtagg |
38665348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 1155241 - 1155175
Alignment:
| Q |
384 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctatgctttgggaact |
450 |
Q |
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| T |
1155241 |
gtgtttctttctgattcagaaacacttgaagctggataatgatgttgagctctgtgctttgggaact |
1155175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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