View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8219_low_4 (Length: 231)
Name: NF8219_low_4
Description: NF8219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8219_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 79005 - 78803
Alignment:
| Q |
20 |
tctaaataaaaggtgccaaaacataaggcaaaaacagattgttcaaaatcagtagaa-gagataagaagnnnnnnnntaagctcaaaaagatcatcccta |
118 |
Q |
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| T |
79005 |
tctaaataaaatgttccaaaacataaggcaaaaacagattgttcaaaatcaggagaaagagataagaa--aaaaaaataagctcaaaaagatcatcccta |
78908 |
T |
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| Q |
119 |
aaggacacacagctatcataatcaactcaataatgaaaagaatacacgaattatgcaagttgaggccacgtcgtataattagctcacatgttcaacacca |
218 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| || |
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| T |
78907 |
aaggacacactgctatcataatcaacgcaataatgaaaagaatacacgaattatgcaaggtgaggtcacgtcctataattagctcacatgttcaacatca |
78808 |
T |
|
| Q |
219 |
aactc |
223 |
Q |
| |
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||||| |
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| T |
78807 |
aactc |
78803 |
T |
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