View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8219_low_5 (Length: 225)

Name: NF8219_low_5
Description: NF8219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8219_low_5
NF8219_low_5
[»] chr3 (3 HSPs)
chr3 (1-225)||(53275287-53275511)
chr3 (24-93)||(11508386-11508455)
chr3 (7-65)||(38107141-38107199)
[»] chr4 (4 HSPs)
chr4 (24-124)||(23226018-23226118)
chr4 (23-65)||(3079615-3079657)
chr4 (6-66)||(3904680-3904740)
chr4 (7-63)||(52756751-52756807)
[»] chr2 (7 HSPs)
chr2 (24-124)||(23227287-23227387)
chr2 (23-127)||(37804339-37804443)
chr2 (24-125)||(31951402-31951502)
chr2 (23-76)||(7004333-7004387)
chr2 (28-122)||(14740486-14740580)
chr2 (60-124)||(13952549-13952613)
chr2 (60-124)||(14093756-14093820)
[»] chr7 (3 HSPs)
chr7 (7-124)||(28469479-28469596)
chr7 (24-69)||(39826231-39826276)
chr7 (24-76)||(31426796-31426848)
[»] chr1 (6 HSPs)
chr1 (24-133)||(12043619-12043727)
chr1 (24-65)||(11989855-11989896)
chr1 (24-136)||(12062575-12062686)
chr1 (4-41)||(28018008-28018045)
chr1 (23-64)||(34648656-34648697)
chr1 (23-59)||(4648833-4648869)
[»] chr6 (4 HSPs)
chr6 (24-120)||(6068959-6069055)
chr6 (24-117)||(14936479-14936572)
chr6 (24-124)||(5685354-5685454)
chr6 (24-123)||(4251324-4251423)
[»] scaffold0171 (1 HSPs)
scaffold0171 (24-122)||(12370-12468)
[»] scaffold0003 (1 HSPs)
scaffold0003 (38-139)||(312747-312848)
[»] chr8 (1 HSPs)
chr8 (28-65)||(24355126-24355163)
[»] scaffold0008 (1 HSPs)
scaffold0008 (23-63)||(117681-117721)
[»] chr5 (2 HSPs)
chr5 (24-132)||(27080947-27081055)
chr5 (25-65)||(35585322-35585362)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 53275287 - 53275511
Alignment:
Q  1 atattatatactccctttggtattatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  53275287 atattatatactccctttggtattatttataaaagatatttgggtcaacaaaaattgatgtatttaatccaaattcttaattagatacatcatattttgt 53275386  T
Q  101 tgatcttaatgtttcttataaatagaaccggaagaaatattttgataaacaatatatgataattggattaatcccaattagaactattctatatacacga 200  Q
    ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53275387 tgaccttaatatttcttataaatagaatcggaagaaatattttgataaacaatatatgataattggattaatcccaattagaactattctatatacacga 53275486  T
Q  201 agactgagaactaaaggatacaatt 225  Q
    |||||||||||||||||||||||||    
T  53275487 agactgagaactaaaggatacaatt 53275511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 11508455 - 11508386
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcat 93  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||| || |||||  |||  |||||||||||    
T  11508455 tatttataaaagatatttgagtcaacaaaaattaatgtatttactctaaattcttaaccagatacatcat 11508386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 38107199 - 38107141
Alignment:
Q  7 tatactccctttggtattatttataaaagatatttgggtcaataaaaattgatgtattt 65  Q
    |||||||||| | ||  ||||||||| |||||||||||||||||||| ||| |||||||    
T  38107199 tatactccctctagttctatttataacagatatttgggtcaataaaagttggtgtattt 38107141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 23226118 - 23226018
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    |||||||| |||||||||||||||| |||| || |||||| | ||||||||||  || | |||||||||  |||||||||||| ||| | ||||||||||    
T  23226118 tatttatagaagatatttgggtcaacaaaagtttatgtatctgatccaaattttgaactggatacatcaatttttgttgatctaaatatctcttataaat 23226019  T
Q  124 a 124  Q
    |    
T  23226018 a 23226018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 3079615 - 3079657
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaattgatgtattt 65  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  3079615 ttatttataaaagatatttttatcaataaaaattgatgtattt 3079657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 3904680 - 3904740
Alignment:
Q  6 atatactccctttggtattatttataaaagatatttgggtcaataaaaattgatgtattta 66  Q
    |||||||||||  |||  ||||||||| |||  |||||||||| |||||||||||||||||    
T  3904680 atatactccctccggtcctatttataagagaattttgggtcaacaaaaattgatgtattta 3904740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 52756807 - 52756751
Alignment:
Q  7 tatactccctttggtattatttataaaagatatttgggtcaataaaaattgatgtat 63  Q
    ||||||||||| |||  |||||||||||||  |||||||||| |||| |||||||||    
T  52756807 tatactcccttcggtcctatttataaaagaattttgggtcaacaaaagttgatgtat 52756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 23227387 - 23227287
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    ||||||||| ||| |||| |||||| |||| |||||||||||  ||||||||  || | |||||||||| |||||||||| || ||| ||||||||||||    
T  23227387 tatttataagagacattttggtcaacaaaagttgatgtatttggtccaaattcttagtcagatacatcacattttgttgacctaaatatttcttataaat 23227288  T
Q  124 a 124  Q
    |    
T  23227287 a 23227287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 37804339 - 37804443
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaa 122  Q
    |||||||||||||| ||||| ||||| ||||||| || ||| | || ||| ||| |||| |||||||| |  |||||||||||  ||| |||||||||||    
T  37804339 ttatttataaaagaaatttgagtcaacaaaaattaatatatctgattcaattttttaatcagatacattaatttttgttgatccaaatttttcttataaa 37804438  T
Q  123 tagaa 127  Q
    |||||    
T  37804439 tagaa 37804443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 31951402 - 31951502
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    ||||||||| |||||||| ||||||||||| ||||||||| | |||| |||||   ||||| |||||||  ||| |||||| | ||||| ||||||||||    
T  31951402 tatttataagagatattttggtcaataaaatttgatgtatctgatccgaattttgtattaggtacatcaactttcgttgat-taaatgtctcttataaat 31951500  T
Q  124 ag 125  Q
    ||    
T  31951501 ag 31951502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 7004387 - 7004333
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaa-ttgatgtatttaatccaaattt 76  Q
    |||||||||| ||||||||| ||||||||||| || ||||||||||| |||||||    
T  7004387 ttatttataatagatatttgagtcaataaaaatttaatgtatttaattcaaattt 7004333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 14740486 - 14740580
Alignment:
Q  28 tataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaa 122  Q
    ||||| ||||||||| ||||| ||||  | ||||||||  ||||||||| |||  |||||||||| |||| |||||  | |||||||||||||||    
T  14740486 tataagagatatttgtgtcaacaaaaggtaatgtatttcgtccaaatttttaaccagatacatcacatttagttgacttaaatgtttcttataaa 14740580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 13952613 - 13952549
Alignment:
Q  60 gtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaata 124  Q
    ||||||| ||||||||  |||  ||||| ||||||||||||| | || |||||||||||||||||    
T  13952613 gtatttagtccaaattcttaacaagataaatcatattttgttaacctaaatgtttcttataaata 13952549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 14093820 - 14093756
Alignment:
Q  60 gtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaata 124  Q
    ||||||| ||||||||  |||  ||||| ||||||||||||| | || |||||||||||||||||    
T  14093820 gtatttagtccaaattcttaacaagataaatcatattttgttaacctaaatgtttcttataaata 14093756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 28469479 - 28469596
Alignment:
Q  7 tatactccctttggtattatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatct 106  Q
    ||||||||||| | | |||||||||||||| |||| |||||| |||| || ||||||    ||||||||  |||| |||||||||| ||||| |||| ||    
T  28469479 tatactcccttcgatcttatttataaaagacatttaggtcaacaaaagttaatgtatcaggtccaaattattaatcagatacatcacattttattgacct 28469578  T
Q  107 taatgtttcttataaata 124  Q
     |||| ||||||||||||    
T  28469579 aaatgattcttataaata 28469596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 39826276 - 39826231
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatc 69  Q
    |||||||| ||||||||||||| | ||||||||||| |||||||||    
T  39826276 tatttatacaagatatttgggttagtaaaaattgatatatttaatc 39826231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 31426796 - 31426848
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaattt 76  Q
    ||||||||||| ||||||| |||||||||||||| ||||| | ||||| ||||    
T  31426796 tatttataaaaaatatttgcgtcaataaaaattgttgtatctgatccacattt 31426848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 12043619 - 12043727
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    ||||||||||||||||||  ||||| |||| ||||||||||| || | ||||| |||  |||||||| |  |||||||||| | ||| ||||||||||||    
T  12043619 tatttataaaagatatttaagtcaacaaaagttgatgtatttgattc-aatttttaacaagatacattaatttttgttgatttaaatttttcttataaat 12043717  T
Q  124 agaaccggaa 133  Q
    || |||||||    
T  12043718 aggaccggaa 12043727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 11989896 - 11989855
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtattt 65  Q
    ||||||||||||| ||||| ||||||||||||||||||||||    
T  11989896 tatttataaaagaaatttgagtcaataaaaattgatgtattt 11989855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 12062575 - 12062686
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    |||||||||||||||||| | |||| |||| ||||||||| | || | ||||| |||| |||||||| |  |||||||||| | ||| | ||||||||||    
T  12062575 tatttataaaagatattttgatcaacaaaagttgatgtatctgattc-aatttttaatcagatacattaatttttgttgatttaaatttctcttataaat 12062673  T
Q  124 agaaccggaagaa 136  Q
    || ||| ||||||    
T  12062674 aggaccagaagaa 12062686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 28018045 - 28018008
Alignment:
Q  4 ttatatactccctttggtattatttataaaagatattt 41  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  28018045 ttatatacttcctttggtattatttataacagatattt 28018008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 34648697 - 34648656
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaattgatgtatt 64  Q
    ||||||||||||||||||||  ||||||||| ||||||||||    
T  34648697 ttatttataaaagatatttgtatcaataaaatttgatgtatt 34648656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 4648869 - 4648833
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaattgat 59  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4648869 ttatttataaaagatatttatgtcaataaaaattgat 4648833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 6069055 - 6068959
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttata 120  Q
    |||||||||||||||||| |||||| |||| || ||||||||  || |||||| ||| | ||||| |||| ||||||||| || ||| |||||||||    
T  6069055 tatttataaaagatatttaggtcaacaaaagttaatgtatttggtctaaatttttaactcgatacttcatcttttgttgacctaaatatttcttata 6068959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 14936572 - 14936479
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttctt 117  Q
    ||||||||| ||||||||||||||| || | |||||||||||    ||||||  ||| |||||||||||  ||||||||| || ||||||||||    
T  14936572 tatttataagagatatttgggtcaacaatagttgatgtatttggaacaaattcttaactagatacatcaccttttgttgacctaaatgtttctt 14936479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 5685354 - 5685454
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    |||| |||||| | ||||||||||| |||| |||||||||||   |||||||  |||  || |||||||||||||| ||| |  ||||||||||||||||    
T  5685354 tattaataaaaaacatttgggtcaacaaaagttgatgtatttggaccaaattattaacaagttacatcatattttgctgacccaaatgtttcttataaat 5685453  T
Q  124 a 124  Q
    |    
T  5685454 a 5685454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 4251324 - 4251423
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    |||||| || ||| ||||| ||||| |||| || | ||| || |||||||||  ||| ||||||||||| ||||| |||| || ||||||||||||||||    
T  4251324 tatttacaagagaaatttgagtcaacaaaagttaacgtacttgatccaaattcttaactagatacatcacattttattgacctaaatgtttcttataaat 4251423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 12468 - 12370
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaa 122  Q
    ||||||||| |||||||| |||||| |||| ||| ||| |||  || |||||  |||  |||||||||| |||||||||| || |||||||||||||||    
T  12468 tatttataagagatattttggtcaaaaaaagttggtgtgtttggtctaaattcttaaccagatacatcacattttgttgacctgaatgtttcttataaa 12370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 312747 - 312848
Alignment:
Q  38 atttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaatagaaccggaagaaa 137  Q
    |||| |||||| |||| || |||||| | ||||||||||  || |||||||||||  |||||||||||  || || |||| |||||| ||||||| ||||    
T  312747 attttggtcaacaaaagttaatgtatctgatccaaattttaaactagatacatcaatttttgttgatcaaaaagtctcttttaaataaaaccggaggaaa 312846  T
Q  138 ta 139  Q
    ||    
T  312847 ta 312848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 24355126 - 24355163
Alignment:
Q  28 tataaaagatatttgggtcaataaaaattgatgtattt 65  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  24355126 tataaaagaaagttgggtcaataaaaattgatgtattt 24355163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 117721 - 117681
Alignment:
Q  23 ttatttataaaagatatttgggtcaataaaaattgatgtat 63  Q
    |||||||||||| ||||||||||||| |||| |||||||||    
T  117721 ttatttataaaaaatatttgggtcaacaaaagttgatgtat 117681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 27081055 - 27080947
Alignment:
Q  24 tatttataaaagatatttgggtcaataaaaattgatgtatttaatccaaatttataattagatacatcatattttgttgatcttaatgtttcttataaat 123  Q
    |||||| || ||| |||| |||||| |||| ||||||||||||||| |||||| |||| | ||| ||||| ||||  | | || |||  ||||| |||||    
T  27081055 tatttacaagagacatttaggtcaacaaaagttgatgtatttaatctaaatttttaatcaaataaatcatcttttactaacctaaatacttcttttaaat 27080956  T
Q  124 agaaccgga 132  Q
    |||||||||    
T  27080955 agaaccgga 27080947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 35585322 - 35585362
Alignment:
Q  25 atttataaaagatatttgggtcaataaaaattgatgtattt 65  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  35585322 atttataaaagatatttgaatcaacaaaaattgatgtattt 35585362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University