View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8220_high_2 (Length: 498)
Name: NF8220_high_2
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Complemental strand, 2285057 - 2284584
Alignment:
| Q |
11 |
gtgttgcagatatctcactttggaatagaaaccattttctacatctcaaacatgatattgataattgtagaaggaagttggactgtgttctaagtcaggt |
110 |
Q |
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| T |
2285057 |
gtgttgcagatatctcactttggaatagaaaccattttctacatctcaaacatgatattgataattgtagaaggaagttggactgtgttctaagtcaggt |
2284958 |
T |
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| Q |
111 |
tcatgctggtaatattaagtatttcaatgctctgaggaaatgtatgtctcatttgttggctaaggaagacactttttggagacaacgagctaagacacat |
210 |
Q |
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| T |
2284957 |
tcatgctggtaatattaagtatttcaatgctctgaggaaatgtatgtctcatttgttggctaaggaagacactttttggagacaacgagctaagacacat |
2284858 |
T |
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| Q |
211 |
tggttccgggagggtgacttgaacactagattgtttcatgcggctgcgacctctagacggttgattaactgtcttacttccttagtgaacacacctagta |
310 |
Q |
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| T |
2284857 |
tggttccgggagggtgacttgaacactagattttttcatgcggctgcaacctctagacggaagattaactgtcttacttccttagtgaacacacctagta |
2284758 |
T |
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| Q |
311 |
cccgaatcaaggatagtttagtcttatgtagtgtgcctcgagattactttgcagagatctttcataagccgataaacatcttatatccggttctagatgc |
410 |
Q |
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| T |
2284757 |
cccgaatcaaggatagtttagtcttatgtagtgtgcctcgagattactttgcagagatctttcataagccgataaacatcttatatccggttctagatgc |
2284658 |
T |
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| Q |
411 |
tattaatccttctatctcagaagatgctaacacaaacctcactacattgtttaccattgatgagttcagtgatg |
484 |
Q |
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| T |
2284657 |
tattaatccttctatctcagaagatgctaacacaaacctcactacattgtttaccattgatgagttcagagatg |
2284584 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 19422569 - 19422658
Alignment:
| Q |
29 |
tttggaatagaaaccattttctacatctcaaacatgatattgataattgtagaaggaagttggactgtgttctaagtcaggttcatgctg |
118 |
Q |
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||||||| ||||| |||||| |||||| ||| | |||||||||||||||||| |||| |||||| |||||| | ||||||||||||||| |
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| T |
19422569 |
tttggaagagaaataattttcaacatctaaaataggatattgataattgtagagggaaattggaccgtgttcgatgtcaggttcatgctg |
19422658 |
T |
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