View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8220_high_3 (Length: 461)

Name: NF8220_high_3
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8220_high_3
NF8220_high_3
[»] chr7 (19 HSPs)
chr7 (18-387)||(22280367-22280746)
chr7 (310-389)||(20137135-20137214)
chr7 (306-375)||(7188719-7188788)
chr7 (295-375)||(16297063-16297144)
chr7 (310-364)||(22393906-22393960)
chr7 (296-365)||(6332390-6332459)
chr7 (310-375)||(22828673-22828738)
chr7 (310-375)||(24748778-24748843)
chr7 (310-375)||(31435087-31435152)
chr7 (300-375)||(13099515-13099591)
chr7 (310-365)||(6348966-6349021)
chr7 (310-361)||(26295631-26295682)
chr7 (294-355)||(13290535-13290595)
chr7 (320-375)||(24817394-24817449)
chr7 (320-363)||(25276335-25276378)
chr7 (320-363)||(39146039-39146082)
chr7 (310-364)||(9679243-9679296)
chr7 (310-360)||(27832688-27832738)
chr7 (294-375)||(6046662-6046742)
[»] chr8 (19 HSPs)
chr8 (294-375)||(31578318-31578399)
chr8 (310-375)||(36865765-36865830)
chr8 (320-375)||(25952760-25952815)
chr8 (310-364)||(15956187-15956241)
chr8 (294-375)||(6376203-6376283)
chr8 (310-375)||(21480732-21480797)
chr8 (294-375)||(31035332-31035412)
chr8 (320-375)||(31162449-31162504)
chr8 (310-375)||(16833779-16833844)
chr8 (310-375)||(21482540-21482605)
chr8 (306-375)||(35872481-35872549)
chr8 (320-360)||(2468185-2468225)
chr8 (323-375)||(13858525-13858577)
chr8 (320-375)||(33541451-33541505)
chr8 (294-375)||(3896035-3896117)
chr8 (310-364)||(15185766-15185820)
chr8 (320-364)||(3005683-3005727)
chr8 (320-364)||(5372229-5372273)
chr8 (323-375)||(14419732-14419784)
[»] chr6 (30 HSPs)
chr6 (294-375)||(20526999-20527079)
chr6 (300-375)||(16455466-16455541)
chr6 (294-380)||(30445717-30445803)
chr6 (294-375)||(19696633-19696714)
chr6 (291-366)||(3833466-3833542)
chr6 (300-374)||(3027895-3027969)
chr6 (310-375)||(15346556-15346620)
chr6 (310-375)||(15541181-15541245)
chr6 (310-375)||(3390588-3390653)
chr6 (310-375)||(13039963-13040028)
chr6 (310-375)||(24338487-24338552)
chr6 (310-374)||(3631979-3632043)
chr6 (310-374)||(15719851-15719915)
chr6 (320-375)||(12186112-12186167)
chr6 (310-389)||(12937220-12937298)
chr6 (294-357)||(28078254-28078316)
chr6 (310-364)||(13057403-13057457)
chr6 (294-364)||(25078609-25078679)
chr6 (310-375)||(1069759-1069824)
chr6 (310-375)||(15367240-15367304)
chr6 (310-375)||(32280205-32280270)
chr6 (320-364)||(14466542-14466586)
chr6 (310-374)||(15532723-15532786)
chr6 (294-372)||(7542425-7542503)
chr6 (310-357)||(22490849-22490896)
chr6 (310-357)||(28037788-28037835)
chr6 (294-375)||(22857994-22858075)
chr6 (306-356)||(26945349-26945399)
chr6 (310-363)||(9020135-9020187)
chr6 (310-375)||(12911487-12911551)
[»] chr4 (29 HSPs)
chr4 (294-375)||(31983568-31983649)
chr4 (187-254)||(26557443-26557510)
chr4 (294-375)||(3982217-3982298)
chr4 (294-375)||(25357853-25357934)
chr4 (296-364)||(28453896-28453964)
chr4 (310-389)||(41997720-41997799)
chr4 (310-389)||(47274954-47275032)
chr4 (294-369)||(54928695-54928770)
chr4 (306-364)||(19322917-19322975)
chr4 (310-375)||(18537515-18537580)
chr4 (300-375)||(15032589-15032664)
chr4 (294-375)||(9863919-9864002)
chr4 (321-375)||(12102326-12102380)
chr4 (306-375)||(24446682-24446750)
chr4 (322-375)||(30136789-30136842)
chr4 (310-375)||(33415529-33415593)
chr4 (310-375)||(38890266-38890331)
chr4 (308-357)||(40999008-40999057)
chr4 (310-374)||(37313107-37313171)
chr4 (310-361)||(2891519-2891570)
chr4 (310-361)||(16453537-16453588)
chr4 (316-375)||(26557819-26557877)
chr4 (294-357)||(47150952-47151015)
chr4 (310-364)||(13544187-13544240)
chr4 (310-364)||(18534884-18534938)
chr4 (297-370)||(3578717-3578789)
chr4 (310-375)||(19096111-19096175)
chr4 (320-364)||(8756303-8756347)
chr4 (320-364)||(16455479-16455523)
[»] chr3 (22 HSPs)
chr3 (310-375)||(3314838-3314903)
chr3 (310-375)||(17795412-17795477)
chr3 (310-375)||(19103852-19103917)
chr3 (294-364)||(14634491-14634561)
chr3 (310-364)||(28761478-28761532)
chr3 (320-388)||(25634051-25634120)
chr3 (310-374)||(53468495-53468559)
chr3 (308-364)||(54884306-54884362)
chr3 (320-375)||(4666680-4666735)
chr3 (310-360)||(3306915-3306965)
chr3 (310-375)||(1620500-1620564)
chr3 (320-389)||(13420210-13420279)
chr3 (310-375)||(53917703-53917767)
chr3 (321-389)||(23633619-23633686)
chr3 (310-364)||(24181534-24181588)
chr3 (310-375)||(32264076-32264142)
chr3 (310-375)||(1626722-1626786)
chr3 (310-375)||(6484514-6484578)
chr3 (294-375)||(36871340-36871420)
chr3 (310-375)||(47701710-47701774)
chr3 (310-375)||(53915535-53915599)
chr3 (294-389)||(31021187-31021281)
[»] chr1 (36 HSPs)
chr1 (310-375)||(6115145-6115210)
chr1 (310-375)||(6756700-6756765)
chr1 (294-375)||(13125500-13125581)
chr1 (320-389)||(18307293-18307362)
chr1 (294-389)||(43104318-43104414)
chr1 (310-375)||(17324237-17324302)
chr1 (320-389)||(31425043-31425112)
chr1 (310-375)||(39462693-39462757)
chr1 (294-389)||(155865-155959)
chr1 (320-375)||(40134128-40134183)
chr1 (310-375)||(50078863-50078928)
chr1 (310-362)||(49495266-49495318)
chr1 (320-375)||(9241128-9241183)
chr1 (320-375)||(14183634-14183689)
chr1 (294-357)||(16561625-16561688)
chr1 (310-389)||(17319061-17319140)
chr1 (320-375)||(18800615-18800670)
chr1 (320-386)||(50076703-50076769)
chr1 (310-375)||(16428827-16428892)
chr1 (310-375)||(16429131-16429196)
chr1 (310-363)||(16432568-16432621)
chr1 (294-375)||(26613282-26613363)
chr1 (294-364)||(30738681-30738753)
chr1 (320-389)||(31490097-31490165)
chr1 (323-375)||(13127730-13127782)
chr1 (310-374)||(18839761-18839825)
chr1 (320-375)||(25128056-25128111)
chr1 (310-357)||(30790461-30790508)
chr1 (310-364)||(8347326-8347380)
chr1 (310-364)||(11457529-11457582)
chr1 (310-364)||(25248605-25248659)
chr1 (310-364)||(42922404-42922458)
chr1 (326-375)||(4131418-4131467)
chr1 (326-375)||(13215275-13215324)
chr1 (310-375)||(15916564-15916629)
chr1 (310-375)||(17186170-17186235)
[»] chr5 (22 HSPs)
chr5 (294-389)||(15445293-15445388)
chr5 (310-375)||(696051-696116)
chr5 (294-372)||(15143624-15143702)
chr5 (310-375)||(9020392-9020457)
chr5 (306-375)||(18596815-18596884)
chr5 (310-363)||(36208750-36208803)
chr5 (310-375)||(40221696-40221761)
chr5 (320-364)||(31472664-31472708)
chr5 (294-369)||(35430338-35430413)
chr5 (296-355)||(4897889-4897948)
chr5 (310-357)||(17413225-17413272)
chr5 (301-375)||(2724058-2724131)
chr5 (310-375)||(18511253-18511317)
chr5 (322-375)||(20054021-20054074)
chr5 (320-375)||(17073067-17073122)
chr5 (294-375)||(2144603-2144684)
chr5 (310-364)||(16092251-16092305)
chr5 (310-375)||(658394-658458)
chr5 (306-375)||(10474364-10474432)
chr5 (320-389)||(20505869-20505936)
chr5 (310-375)||(21948200-21948264)
chr5 (310-350)||(42770984-42771024)
[»] chr2 (25 HSPs)
chr2 (306-375)||(22874276-22874345)
chr2 (294-364)||(15694038-15694108)
chr2 (310-375)||(6264189-6264254)
chr2 (291-375)||(35028706-35028790)
chr2 (310-389)||(6258843-6258922)
chr2 (310-389)||(17897272-17897351)
chr2 (294-357)||(40699508-40699571)
chr2 (291-357)||(13828401-13828467)
chr2 (306-363)||(17849263-17849320)
chr2 (310-375)||(20146649-20146714)
chr2 (310-389)||(18800340-18800419)
chr2 (310-361)||(44289122-44289173)
chr2 (310-364)||(28459241-28459295)
chr2 (310-364)||(31732828-31732882)
chr2 (298-375)||(28196775-28196851)
chr2 (310-375)||(45239018-45239082)
chr2 (320-364)||(14837427-14837471)
chr2 (294-364)||(33604056-33604125)
chr2 (310-375)||(5375387-5375451)
chr2 (310-375)||(21520734-21520798)
chr2 (310-375)||(22407495-22407559)
chr2 (295-364)||(35107430-35107498)
chr2 (330-375)||(39287262-39287307)
chr2 (291-375)||(41303074-41303156)
chr2 (320-364)||(20589851-20589895)
[»] scaffold0339 (1 HSPs)
scaffold0339 (310-389)||(4179-4257)
[»] scaffold0468 (1 HSPs)
scaffold0468 (310-375)||(1683-1748)
[»] scaffold0057 (1 HSPs)
scaffold0057 (310-357)||(16709-16756)
[»] scaffold0224 (1 HSPs)
scaffold0224 (310-364)||(15873-15927)
[»] scaffold0131 (1 HSPs)
scaffold0131 (310-372)||(15202-15263)
[»] scaffold0045 (1 HSPs)
scaffold0045 (310-364)||(85413-85467)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 22280746 - 22280367
Alignment:
Q  18 atttttacataaaaatctaaggaattagtggacaatataactaatggaaactaagtgatttatttgcatatgacttttatggatttcaattataatatgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  22280746 atttttacataaaaatctaaggaattagtggacaatataactaatggaaactaagtgatttatttggatatgacttttatggatttcaattatattatgg 22280647  T
Q  118 tagttagtattgttgtagtatgactcaaaactggagttctgcaggactgccaaaatcggcggc----------aaatttgggcccaattttggctgagtt 207  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||          ||||| |||||||||||||||||||||    
T  22280646 tagttagtattgttgttgtatgactcaaaattggagttctgcaggactgccaaaatcgacagccgatttggcaaaattggggcccaattttggctgagtt 22280547  T
Q  208 tggagacttttgtctcgacaaaaatcggcgtccgaagtgatataatcggtgcccgattacgctaatgcagaaaaacaaaaacgtatgtttgaagattgat 307  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||| |||||||||||    
T  22280546 tggagacttttgtctcaacaaaaatcggcgcccgaagtgatataatcggtgcccgattacgctgatgcagaaaaacagaaatgtatgtctgaagattgat 22280447  T
Q  308 ttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactag 387  Q
    ||||||||||  ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  22280446 ttttgtaacccgttgatatctcttttgtaaagttattgatcattatagtgaaacagaaagctgctctcaccacagactag 22280367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 20137214 - 20137135
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||| || ||||||||||    
T  20137214 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacggagggctgctctctccccagactaggt 20137135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 7188719 - 7188788
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||| |||||  ||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  7188719 atttttataacccattgatatttcttttgtaaagttattcatcattatagtggaacggaaggctgctctc 7188788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 16297144 - 16297063
Alignment:
Q  295 tttgaagattgatttttgtaacc-ttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||| |||||||| |||| |||||||||||| ||| ||| |||||||||||||  |||||| ||||||||||    
T  16297144 tttgaagattgattcttgtaacccttttaatatctcttttgcaaagttactcatcattatagtagaacggagagctgctctc 16297063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 22393906 - 22393960
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||    
T  22393906 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacgga 22393960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 6332390 - 6332459
Alignment:
Q  296 ttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaa 365  Q
    ||||||| | ||| |||||||| ||| |||||||||||||||| ||| |||||||||||||| |||||||    
T  6332390 ttgaagacttattcttgtaaccctttaatatctcttttgtaaagttactcatcattatagtggaacggaa 6332459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 22828738 - 22828673
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||||||| |||| ||||||||||||| ||  |||||||||    
T  22828738 ttgtaacccattgatatctcttttgtaaaattactcattattatagtgaaacagagggctgctctc 22828673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 24748778 - 24748843
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||    
T  24748778 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctctc 24748843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 31435152 - 31435087
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  31435152 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 31435087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 13099591 - 13099515
Alignment:
Q  300 agattgatttttgtaaccttttgatatctctttt-gtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||| ||| ||||||||  |||||||||||||| ||||| ||| |||||||||||||||||||||  |||||||||    
T  13099591 agatttattcttgtaacccattgatatctctttttgtaaagttactcatcattatagtgaaacggagggctgctctc 13099515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 6348966 - 6349021
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaa 365  Q
    ||||||||  ||||||||||||||||||||||| ||||||||| |||| |||||||    
T  6348966 ttgtaacccattgatatctcttttgtaaaattactcatcattacagtggaacggaa 6349021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 26295631 - 26295682
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaac 361  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||||||||||    
T  26295631 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaac 26295682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 13290595 - 13290535
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatag 355  Q
    ||||||||| | ||| |||||||||||||||||||| |||||||| ||| ||||||||||||    
T  13290595 gtttgaagaataattcttgtaaccttttgatatctc-tttgtaaagttactcatcattatag 13290535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 24817449 - 24817394
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||| ||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  24817449 ttgatgtctcttttgtaaagttactcatcattatagtggaacggatggctgctctc 24817394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Original strand, 25276335 - 25276378
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||    
T  25276335 ttgatatctcttttgtaaagttactcatcattatagtggaacgg 25276378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 363
Target Start/End: Complemental strand, 39146082 - 39146039
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||||||||||||  ||| ||||||||||||||||||||    
T  39146082 ttgatatctcttttgtaaggttactcatcattatagtgaaacgg 39146039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 9679243 - 9679296
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||    
T  9679243 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacgga 9679296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 27832738 - 27832688
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaa 360  Q
    ||||||||  |||||||||||| |||||| ||| |||||||||||||||||    
T  27832738 ttgtaacccattgatatctcttctgtaaagttactcatcattatagtgaaa 27832688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 6046662 - 6046742
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||| | |||||||||||||| ||||| ||| |||||||||||||| || | | ||||||||||    
T  6046662 gtttgaagacttattcttgtaaacctttgatatctcttt-gtaaagttactcatcattatagtggaatgaagagctgctctc 6046742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 31578399 - 31578318
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| | ||||||||    
T  31578399 gtttgaagactaattcttgtaaccttttgatatctcttttgtaaagttactcatcattatagtggaacggagaactgctctc 31578318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 36865765 - 36865830
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  || |||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  36865765 ttgtaacccattaatatctcttttgtaaagttactcatcattatagtgaaacggaatgctgctctc 36865830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 25952760 - 25952815
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  25952760 ttgatatctcttttgtaaaattactcatcattatagtggaacggagggctgctctc 25952815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 15956187 - 15956241
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||    
T  15956187 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacgga 15956241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 6376203 - 6376283
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||| |||||||||||||||||| ||||| ||| |||||||||||||| ||| ||| |||||||||    
T  6376203 gtttgaagactaattcttgttaccttttgatatctcttt-gtaaagttactcatcattatagtggaacagaaggctgctctc 6376283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 21480732 - 21480797
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||| ||  |||||||||    
T  21480732 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacagagggctgctctc 21480797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 31035332 - 31035412
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||| |||||||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  31035332 gtttgaagacttattcttgtaaccctttgatatctcttt-gtaaagttactcatcattatagtggaacggagggctgctctc 31035412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 31162449 - 31162504
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||  |||||||||    
T  31162449 ttgatatctcttttgtaaaattactcatcattatagtggaacagagggctgctctc 31162504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 16833779 - 16833844
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||| | |||||||||||||||||||| ||| ||| |||||||||| |||| || |||||||||    
T  16833779 ttgtaatcatttgatatctcttttgtaaagttactcaacattatagtggaacgaaaggctgctctc 16833844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 21482540 - 21482605
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||  ||||||||  |||||||||    
T  21482540 ttgtaacccattgatatctcttttgtaaagttactcatcattataaagaaacggagggctgctctc 21482605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 35872549 - 35872481
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||| |  |||||||||||||||||| |||| |||||| ||||||||||||||  |||||||||    
T  35872549 atttttgtaagccattgatatctcttttgtaacattactcatca-tatagtgaaacggagggctgctctc 35872481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 2468225 - 2468185
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaa 360  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  2468225 ttgatatctcttttgtaaagttactcatcattatagtgaaa 2468185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 13858577 - 13858525
Alignment:
Q  323 atatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||||| ||| |||||||||||||||||| ||  |||||||||    
T  13858577 atatctcttttgtaaagttactcatcattatagtgaaacagagggctgctctc 13858525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 33541505 - 33541451
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||    
T  33541505 ttgatatctcttttgtaaggttactcatcat-atagtgaaacggaaggctgctctc 33541451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 3896035 - 3896117
Alignment:
Q  294 gtttgaagattgatttttgtaac-cttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||| ||| ||| ||||||| ||| |||||||||||||||||| ||| ||||||||| |||  ||||||  |||||||||    
T  3896035 gtttgaaaattaattcttgtaactcttatgatatctcttttgtaaagttactcatcattaaagtagaacggatggctgctctc 3896117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 15185820 - 15185766
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  |||||||||||||| |||  ||| |||||||||||||||||||||    
T  15185820 ttgtaacccattgatatctcttttttaaggttactcatcattatagtgaaacgga 15185766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 3005727 - 3005683
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||| ||  |||||||||||||| ||||||    
T  3005727 ttgatatctcttttgtaaagttgctcatcattatagtggaacgga 3005683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 5372273 - 5372229
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||| ||||||||  ||| |||||||||||||||||||||    
T  5372273 ttgatatcttttttgtaaggttactcatcattatagtgaaacgga 5372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 14419732 - 14419784
Alignment:
Q  323 atatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||||  ||| ||||||||||||| |||||||  |||||||||    
T  14419732 atatctcttttgtaaggttactcatcattatagtaaaacggatggctgctctc 14419784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 20526999 - 20527079
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||    
T  20526999 gtttgaagactaattcttgtaaccttttgatatctcttt-gtaaagttattcatcattatagtggaacggagagctgctctc 20527079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 16455541 - 16455466
Alignment:
Q  300 agattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  16455541 agatttattcttgtaaccctttgatatctcttttgtaaaattactcatcattatagtggaacggagggctgctctc 16455466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 294 - 380
Target Start/End: Original strand, 30445717 - 30445803
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccac 380  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |||||| | |||||||| ||||    
T  30445717 gtttgaagactaattcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtggaacggagaactgctctctccac 30445803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 19696633 - 19696714
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||| | |||||||||||||||||||| |||||||||||||||||| ||| || ||||||||||    
T  19696633 gtttgaagacttattcttgtaatcctttgatatctcttttgtaaagttattcatcattatagtggaacagatagctgctctc 19696714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 3833466 - 3833542
Alignment:
Q  291 tatgtttgaagattgatttttgtaaccttttgatatctcttttgtaaaatt-attcatcattatagtgaaacggaaa 366  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||| || | |||||||||||||| ||||||||    
T  3833466 tatgtttgaaaattgattcttgtaaccctttgatatctcttttgtaaagttaactcatcattatagtggaacggaaa 3833542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 3027969 - 3027895
Alignment:
Q  300 agattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||| ||||||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||  ||||||||    
T  3027969 agatttatttttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctct 3027895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 15346556 - 15346620
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  15346556 ttgtaacccattgatatctctattgtaaagttattcatca-tatagtgaaacggaaagctgctctc 15346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 15541245 - 15541181
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  15541245 ttgtaacccattgatatctcttttgtaaagttattcatca-tatagtgaaacagaaagctgctctc 15541181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 3390588 - 3390653
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||| |||||||||||  |||||||||    
T  3390588 ttgtaacccattgatatctcttttgtaaagttactcatcattacagtgaaacggagggctgctctc 3390653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 13039963 - 13040028
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||    
T  13039963 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctctc 13040028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 24338552 - 24338487
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||    
T  24338552 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctctc 24338487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 3632043 - 3631979
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||  ||||||||    
T  3632043 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctct 3631979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 15719851 - 15719915
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||| || || ||||||    
T  15719851 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacagagagttgctct 15719915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 12186167 - 12186112
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  12186167 ttgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 12186112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 12937298 - 12937220
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    |||||||| ||| |||||||||| ||||| ||| |||||||||||||| ||||||  ||||||||| || ||||||||||    
T  12937298 ttgtaaccatttaatatctcttt-gtaaagttactcatcattatagtggaacggagggctgctctctccccagactaggt 12937220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 28078316 - 28078254
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||| | ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  28078316 gtttgaagacttattcttgtaaccttt-gatatctcttttgtaaagttactcatcattatagtg 28078254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 13057403 - 13057457
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||    
T  13057403 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacgga 13057457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 25078679 - 25078609
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| || |||||| |||| ||||||    
T  25078679 gtttgaagacttattcttgtaaccctttgatatctcttttgtaaagttactcgtcattacagtggaacgga 25078609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 1069824 - 1069759
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||| ||||||||  |||||||||    
T  1069824 ttgtaacccattgatatctcttttgtaaggttactcatcattatagagaaacggagggctgctctc 1069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 15367240 - 15367304
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  || |||||||| ||||||| |||||||||| ||||||||||||||| |||||||||    
T  15367240 ttgtaacccattaatatctctattgtaaagttattcatca-tatagtgaaacggaaggctgctctc 15367304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 32280205 - 32280270
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| ||||| ||||||| |||||||  |||||||||    
T  32280205 ttgtaacccattgatatctcttttgtaaagttactcatcgttatagtaaaacggagggctgctctc 32280270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 14466542 - 14466586
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  14466542 ttgatatctcttttgtaaggttattcatcattatagtgaaccgga 14466586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 15532786 - 15532723
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  ||||||||    
T  15532786 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctct 15532723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 372
Target Start/End: Complemental strand, 7542503 - 7542425
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattc-atcattatagtgaaacggaaagctgct 372  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||| ||| || |  |||| |||||||||||||||||||    
T  7542503 gtttgaagactaatttttgtaaccctttgatatctc-tttgtaaagttactcaaaaattacagtgaaacggaaagctgct 7542425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 22490849 - 22490896
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||  |||||||||||||||||| |||| ||||||||||||||    
T  22490849 ttgtaacccattgatatctcttttgtaagattactcatcattatagtg 22490896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 28037835 - 28037788
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    |||||||| |||||||||||||||||||| ||| ||||||| ||||||    
T  28037835 ttgtaaccctttgatatctcttttgtaaagttactcatcataatagtg 28037788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 22858075 - 22857994
Alignment:
Q  294 gtttgaagattgatttttgtaacc-ttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||| ||||||||| ||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  22858075 gtttgaagactaattcttgtaacccttttgatatatcttt-gtaaagttactcatcattatagtggaacggatggctgctctc 22857994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 26945349 - 26945399
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagt 356  Q
    |||||||||||   ||||||||||||||||||| ||| |||||||||||||    
T  26945349 atttttgtaactcattgatatctcttttgtaaagttactcatcattatagt 26945399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 9020135 - 9020187
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||  ||||||||||||||||||| ||| |||||| |||||||||||||    
T  9020135 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacgg 9020187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 12911551 - 12911487
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||| ||| |||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  12911551 ttgtaaccatttaatatctcttt-gtaaagttactcatcattatagtggaacggagggctgctctc 12911487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 31983649 - 31983568
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | |||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||  |||||||||    
T  31983649 gtttgaagacttatttttgtaaccctttgatatcttttttgtaaaattactcatcattatagtggaacggagggctgctctc 31983568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 26557443 - 26557510
Alignment:
Q  187 gggcccaattttggctgagtttggagacttttgtctcgacaaaaatcggcgtccgaagtgatataatc 254  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||  |||||||||||| ||||    
T  26557443 gggcccaattttggctgagtttagagacttctgtctcgacaaaaatcggtatccgaagtgataaaatc 26557510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 3982298 - 3982217
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| ||||| |||||||  |||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  3982298 gtttgaagactgattcttgtaacactttgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 3982217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 25357853 - 25357934
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| |||||||||||||  |||||| ||||||||||    
T  25357853 gtttgaagacttattcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtagaacggatagctgctctc 25357934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 28453896 - 28453964
Alignment:
Q  296 ttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||| | ||| |||||| |||||||||||||||||||||| ||| |||||||||||||| ||||||    
T  28453896 ttgaagactaattcttgtaaacttttgatatctcttttgtaaagttactcatcattatagtggaacgga 28453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 41997720 - 41997799
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    |||||||| ||| |||||||||||||||| ||| ||||||| |||||||||||||  || |||||| || ||||||||||    
T  41997720 ttgtaaccctttaatatctcttttgtaaagttactcatcatcatagtgaaacggagggccgctctctccccagactaggt 41997799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 47274954 - 47275032
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  ||||||||| || ||||||||||    
T  47274954 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctctccccagactaggt 47275032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 54928770 - 54928695
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagct 369  Q
    ||||||||| ||||| ||||||| |||| |||||||||||||||| ||| |||||| ||||||| |||||| ||||    
T  54928770 gtttgaagactgattcttgtaacattttaatatctcttttgtaaagttactcatcactatagtggaacggagagct 54928695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 19322917 - 19322975
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  19322917 atttttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacgga 19322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 18537580 - 18537515
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  18537580 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 18537515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 15032664 - 15032589
Alignment:
Q  300 agattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||| ||| ||||||||  ||||||||||||||||||| ||| ||||||||| |||| |||| | ||||||||||    
T  15032664 agatttattcttgtaacccattgatatctcttttgtaaagttactcatcattacagtggaacgaagagctgctctc 15032589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 9863919 - 9864002
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaatta---ttcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||||||||||||||| |||||||| |||    |||||||||||||| |||||| ||||||||||    
T  9863919 gtttgaagactaattcttgtaaccttttgatatctc-tttgtaaagttactcatcatcattatagtggaacggagagctgctctc 9864002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 12102326 - 12102380
Alignment:
Q  321 tgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  12102326 tgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 12102380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 24446750 - 24446682
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||| |  |||||||||||||||||| |||| |||||| ||||||||||||||  |||||||||    
T  24446750 atttttgtaagccattgatatctcttttgtaacattactcatca-tatagtgaaacggagggctgctctc 24446682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 30136789 - 30136842
Alignment:
Q  322 gatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||  |||||||||    
T  30136789 gatatctcttttgtaaagttaatcatcattatagtgaaacagatggctgctctc 30136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 33415593 - 33415529
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  33415593 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctc 33415529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 38890331 - 38890266
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||| ||| ||  |||||||||    
T  38890331 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacagagggctgctctc 38890266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 40999057 - 40999008
Alignment:
Q  308 ttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    |||||||||| |||||||||||||||||||| ||| ||||| ||||||||    
T  40999057 ttttgtaaccctttgatatctcttttgtaaagttactcatcgttatagtg 40999008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 37313171 - 37313107
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  || |||||||||||||||| ||| |||||||||||||| ||||||  ||||||||    
T  37313171 ttgtaacccattaatatctcttttgtaaagttactcatcattatagtggaacggagggctgctct 37313107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 2891519 - 2891570
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaac 361  Q
    ||||||||  ||||||||||||||||||  ||| ||||||||||||||||||    
T  2891519 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaac 2891570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 16453537 - 16453588
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaac 361  Q
    ||||||||  ||||||||||||||||||  ||| ||||||||||||||||||    
T  16453537 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaac 16453588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 26557819 - 26557877
Alignment:
Q  316 ccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||| |||||||| ||| ||||| |||||||| |||||| ||||||||||    
T  26557819 ccttttgatatctc-tttgtaaagttactcatcgttatagtggaacggagagctgctctc 26557877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 47151015 - 47150952
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||| | ||| |||||||| ||||||||||||||| |||| ||  ||||||||||||||    
T  47151015 gtttgaagacttattcttgtaaccctttgatatctcttttctaaagttgctcatcattatagtg 47150952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 13544187 - 13544240
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||    
T  13544187 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacgga 13544240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 18534938 - 18534884
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  |||||||||||||||||||| || |||| ||||||||| ||||||    
T  18534938 ttgtaacccattgatatctcttttgtaaaactactcataattatagtggaacgga 18534884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 370
Target Start/End: Complemental strand, 3578789 - 3578717
Alignment:
Q  297 tgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctg 370  Q
    |||||| | ||| ||||||| ||||||||||||||| ||||| ||| |||||||||||||| || ||| |||||    
T  3578789 tgaagactaattcttgtaacattttgatatctcttt-gtaaagttactcatcattatagtggaatggagagctg 3578717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 19096111 - 19096175
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| | ||||| ||||||||||||| ||||||||||    
T  19096111 ttgtaacccattgatatctcttttgtaacgttacttatcat-atagtgaaacggagagctgctctc 19096175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 8756347 - 8756303
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||| ||| | |||||||||||| ||||||    
T  8756347 ttgatatctcttttgtaaagttactaatcattatagtggaacgga 8756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 16455479 - 16455523
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||  ||| || ||||||||||||||||||    
T  16455479 ttgatatctcttttgtaaggttactcgtcattatagtgaaacgga 16455523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 3314838 - 3314903
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3314838 ttgtaacccattgatatctcttttgtaaaattattcatcattatagtgaaacggagggctgctctc 3314903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 17795412 - 17795477
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||    
T  17795412 ttgtaacccattgatatctcttttgtaaagttactcatcattataatgaaacggaaggctgctctc 17795477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 19103852 - 19103917
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||| |||||||||| |||||||||    
T  19103852 ttgtaacccattgatatctcttttgtaaagttactcatcattataatgaaacggaaggctgctctc 19103917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 14634561 - 14634491
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||| ||||| |||||| | |||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  14634561 gtttgaagactgattcttgtaaacctttgatatctcttttgtaaagttactcatcataatagtggaacgga 14634491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 28761532 - 28761478
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||    
T  28761532 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacgga 28761478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 25634051 - 25634120
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcacca-cagactagg 388  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| |  ||||||||| ||| |||||||||    
T  25634051 ttgatatctcttttgtaaagttactcatcattatagtgaaacgaatggctgctctctccaccagactagg 25634120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 53468559 - 53468495
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||||||  ||||||||    
T  53468559 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctct 53468495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 364
Target Start/End: Original strand, 54884306 - 54884362
Alignment:
Q  308 ttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    |||||||| || ||||||||||||||||||| ||| |||||||||||||| ||||||    
T  54884306 ttttgtaatctattgatatctcttttgtaaagttactcatcattatagtggaacgga 54884362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 4666680 - 4666735
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||    
T  4666680 ttgatatctcttttgtaaggttactcatcattatagtgaaacggagggctgctctc 4666735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 3306915 - 3306965
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaa 360  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||    
T  3306915 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaa 3306965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 1620564 - 1620500
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||| |||||||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  1620564 ttgtaaccctttgatatctcttt-gtaaacttactcatcattatagtggaacggagggctgctctc 1620500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 13420279 - 13420210
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||||||||||||| ||| |||| |||||| || |||||| |||||||||| |  ||||||||||    
T  13420279 ttgatatctcttttgtaaagttactcattattataatggaacggagagctgctctctcaccagactaggt 13420210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 53917767 - 53917703
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  53917767 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctc 53917703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 389
Target Start/End: Original strand, 23633619 - 23633686
Alignment:
Q  321 tgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    |||||||||||| ||||| ||| ||||||||||||||||| |||  ||||||||| || ||||||||||    
T  23633619 tgatatctcttt-gtaaagttactcatcattatagtgaaaaggagggctgctctctccccagactaggt 23633686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 24181534 - 24181588
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||| ||||||||||| ||| |||||||||||||| ||||||    
T  24181534 ttgtaacccattgatatttcttttgtaaagttactcatcattatagtggaacgga 24181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 32264142 - 32264076
Alignment:
Q  310 ttgtaaccttttgatatctctttt-gtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  |||||||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  32264142 ttgtaacccattgatatctctttttgtaaagttactcatcattatagtggaacggagggctgctctc 32264076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 1626786 - 1626722
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  1626786 ttgtaacccattgatatctcttttgtaaggttactcatca-tatagtgaaacggagggctgctctc 1626722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 6484514 - 6484578
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||| ||||||||| ||| ||||||| |||||||||||||  |||||||||    
T  6484514 ttgtaacccattgatatcttttttgtaaagttactcatcat-atagtgaaacggagggctgctctc 6484578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 36871420 - 36871340
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| ||| |||| |||| ||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  36871420 gtttgaagacttattcttgcaaccctttgttatctcttt-gtaaagttaatcatcattatagtggaacggagggctgctctc 36871340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 47701774 - 47701710
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  47701774 ttgtaacccattgatatctcttttgtaaggttactcatca-tatagtgaaacggagggctgctctc 47701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 53915599 - 53915535
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||| ||||||||||||  |||||||||    
T  53915599 ttgtaacccattgatatctcttttgtaatgttactcatcatt-tagtgaaacggagggctgctctc 53915535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 31021281 - 31021187
Alignment:
Q  294 gtttgaagattgatttttgtaacc-ttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||| | ||| |||||||| |||| | |||||||| ||||| ||| ||||||||||| |||| ||||  |||||||||||| ||||||||||    
T  31021281 gtttgaagactaattcttgtaacccttttaacatctcttt-gtaaagttactcatcattatattgaa-cggagggctgctctcaccccagactaggt 31021187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 6115210 - 6115145
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  6115210 ttgtaaccaattgatatctcttttgtaaaattactcatcattatagtgaaacggaatgctgctctc 6115145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 6756700 - 6756765
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||  ||||||||    
T  6756700 ttgtaacctattgatatctcttttgtaaagttactcatcattatagtgaaacggaagactgctctc 6756765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 13125581 - 13125500
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |||||| || |||||||    
T  13125581 gtttgaagacttattcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtggaacggagagttgctctc 13125500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 18307293 - 18307362
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||  ||||||||| || ||||||||||    
T  18307293 ttgatatctcttttgtaaagttactcatcattatagtgaaacggatggctgctctctccccagactaggt 18307362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 43104318 - 43104414
Alignment:
Q  294 gtttgaagattgattt-ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    |||||||||||  ||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |||||| || |||||||  | ||||||||||    
T  43104318 gtttgaagatttttttcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtggaacggagagatgctctcctcccagactaggt 43104414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 17324237 - 17324302
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  |||||||||||||||||||||||||| |||| ||||    
T  17324237 ttgtaacccattgatatctcttttgtaaggttattcatcattatagtgaaacggaaggctggtctc 17324302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 31425112 - 31425043
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||| ||||||||| || || |||||||    
T  31425112 ttgatatctcttttgtaaggttactcatcattatagtgaaacggaaggctgctctctccccatactaggt 31425043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 39462693 - 39462757
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||| |||||||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  39462693 ttgtaaccctttgatatctcttttgaaaagttattcatca-tatagtgaaacggagagctgctctc 39462757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 155865 - 155959
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||| | ||| ||||||||||||| ||||||||| ||||| ||| |||||||||||||| ||||||  ||||||||| || || |||||||    
T  155865 gtttgaagagtaattcttgtaaccttttgttatctcttt-gtaaagttactcatcattatagtggaacggatggctgctctctccccaaactaggt 155959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 40134128 - 40134183
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  40134128 ttgatatctcttttgtaaagttactcatcattatagtgaaacggatggctgctctc 40134183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 50078928 - 50078863
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||||| ||| ||  |||||||||    
T  50078928 ttgtaacccattgatatctcttttgtaaagttattcatcattatagtggaacagatggctgctctc 50078863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 49495318 - 49495266
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacg 362  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||    
T  49495318 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacg 49495266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 9241183 - 9241128
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  9241183 ttgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 9241128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 14183689 - 14183634
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  14183689 ttgatatctcttttgtaaagttactcatcattatagtggaacggatggctgctctc 14183634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 16561625 - 16561688
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||    
T  16561625 gtttgaagacttattcttgtaaccctttgatatctcttttgtaaagttactcatcattacagtg 16561688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 17319061 - 17319140
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||| | |||||||||||||||| || ||| ||||||||||||| |||||||  ||||||||| ||  |||||||||    
T  17319061 ttgtaacttattgatatctcttttgttaagttactcatcattatagtaaaacggagggctgctctctccctagactaggt 17319140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 18800670 - 18800615
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||| | ||||||||    
T  18800670 ttgatatctcttttgtaaagttactcatcattatagtgaagcggagaactgctctc 18800615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 50076769 - 50076703
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagacta 386  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||   |||||||| || |||||||    
T  50076769 ttgatatctcttttgtaaagttactcatcattatagtggaacggatgactgctctctccccagacta 50076703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 16428827 - 16428892
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||| ||||||||||||  |||||||||    
T  16428827 ttgtaacccattgatatctcttttgtaaggttactcatcattttagtgaaacggagggctgctctc 16428892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 16429131 - 16429196
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||| ||||||||  |||||||||    
T  16429131 ttgtaacccattgatatctcttttgtaaggttactcatcattatagcgaaacggagggctgctctc 16429196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 16432568 - 16432621
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||  ||||||||||||||||||  ||| ||||||||||||||||||||    
T  16432568 ttgtaacccattgatatctcttttgtaatgttactcatcattatagtgaaacgg 16432621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 26613363 - 26613282
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| |||||||| |||||||||||||||| ||| ||| | |||||||||||| ||| || |||| |||||    
T  26613363 gtttgaagacttattcttgtaaccctttgatatctcttttggaaagttactaatcattatagtggaacagagagcttctctc 26613282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 364
Target Start/End: Complemental strand, 30738753 - 30738681
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatc--attatagtgaaacgga 364  Q
    ||||||||| | ||| |||||||| |||||| ||||||||||||| ||| |||||  ||||||||||||||||    
T  30738753 gtttgaagacttattcttgtaaccctttgatgtctcttttgtaaagttactcatcatattatagtgaaacgga 30738681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 31490097 - 31490165
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||||||||||||  |||||||||| ||| ||||||||||  ||||||||| || ||||||||||    
T  31490097 ttgatatctcttttgtaaggttattcatca-tatggtgaaacggagggctgctctccccccagactaggt 31490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 375
Target Start/End: Complemental strand, 13127782 - 13127730
Alignment:
Q  323 atatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||||||| ||| |||||||||||||  |||||| ||||||||||    
T  13127782 atatctcttttgtaaagttactcatcattatagtagaacggagagctgctctc 13127730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 18839761 - 18839825
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctct 374  Q
    ||||||||  ||||||||||||||||||  ||| |||||||||||||||||| ||  ||||||||    
T  18839761 ttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacagagggctgctct 18839825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 25128056 - 25128111
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||  ||| ||||||||||| |||||||||  |||||||||    
T  25128056 ttgatatctcttttgtaaggttactcatcattatattgaaacggagggctgctctc 25128111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 30790508 - 30790461
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||||||    
T  30790508 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtg 30790461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 8347380 - 8347326
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||| ||||||||| ||||||    
T  8347380 ttgtaacccattgatatctcttttgtaaagttactcattattatagtggaacgga 8347326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 11457582 - 11457529
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||    
T  11457582 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacgga 11457529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 25248659 - 25248605
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||  ||| |||| ||||||||||||||||    
T  25248659 ttgtaacccattgatatctcttttgtaaggttactcataattatagtgaaacgga 25248605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 42922404 - 42922458
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||| |||| ||||||    
T  42922404 ttgtaacccattgatatctcttttgtaaagttactcatcattagagtggaacgga 42922458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 4131467 - 4131418
Alignment:
Q  326 tctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  4131467 tctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 4131418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Original strand, 13215275 - 13215324
Alignment:
Q  326 tctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  13215275 tctcttttgtaaatttactcatcattatagtggaacggagggctgctctc 13215324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 15916564 - 15916629
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  |||||||||||||| |||| ||| || ||||||||||| ||||||  |||||||||    
T  15916564 ttgtaacccattgatatctcttttataaagttactcgtcattatagtggaacggagggctgctctc 15916629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 17186235 - 17186170
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  || |||||||||||||||| ||| ||||||||||| || ||||||  |||||||||    
T  17186235 ttgtaacccattaatatctcttttgtaaagttactcatcattataatggaacggagtgctgctctc 17186170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 15445388 - 15445293
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |||| |  |||||||||  | ||||||||||    
T  15445388 gtttgaagaatgattcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtggaacgaagggctgctctcttcccagactaggt 15445293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 696051 - 696116
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||  |||||||||    
T  696051 ttgtaacccattgatatctcttttgtaaagttattcatcattatagtgaaacggagggctgctctc 696116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 15143624 - 15143702
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgct 372  Q
    ||||||||| | ||| |||||||| |||||||||||||||||||| ||| |||||||||||||| |||||  |||||||    
T  15143624 gtttgaagacttattcttgtaaccctttgatatctcttttgtaaagttactcatcattatagtggaacggggagctgct 15143702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 9020392 - 9020457
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||| | ||||  |||||||||    
T  9020392 ttgtaacccattgatatctcttttgtaaaattactcatcattatagtggatcggatggctgctctc 9020457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 18596815 - 18596884
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||   ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  18596815 atttttgtaactcattgatatctcttttgtaaagttactcatcattatagtggaacggatggctgctctc 18596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 36208750 - 36208803
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||    
T  36208750 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacgg 36208803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 40221696 - 40221761
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  40221696 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacggatggctgctctc 40221761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 31472708 - 31472664
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||    
T  31472708 ttgatatctcttttgtaaagttactcatcattatagtgaaacgga 31472664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 35430338 - 35430413
Alignment:
Q  294 gtttgaagattgatttttgtaac-cttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagct 369  Q
    ||||||||| ||||| ||||||  |||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  35430338 gtttgaagactgattcttgtaattcttttgatatctcttt-gtaaagttactcatcattatagtggaacggaaagct 35430413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 4897889 - 4897948
Alignment:
Q  296 ttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatag 355  Q
    ||||||| ||||| |||||||| |||||||||||| ||||||| ||| ||||||||||||    
T  4897889 ttgaagactgattcttgtaaccatttgatatctctattgtaaagttactcatcattatag 4897948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 17413272 - 17413225
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||    
T  17413272 ttgtaaccctttgatatctcttttgtaaagttactcatcattatagtg 17413225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 2724058 - 2724131
Alignment:
Q  301 gattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||| ||| ||||||||  |||||||||||||||||| |||| |||||| ||||||||||||||  |||||||||    
T  2724058 gatttattcttgtaacccattgatatctcttttgtaagattactcatca-tatagtgaaacggagggctgctctc 2724131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 18511317 - 18511253
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  18511317 ttgtaacccgttgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctc 18511253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 375
Target Start/End: Original strand, 20054021 - 20054074
Alignment:
Q  322 gatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||| |||||||||    
T  20054021 gatatctcttttgtaaagttactcatcattatagtagaacggaaggctgctctc 20054074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 17073067 - 17073122
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||||||||  ||| ||||||||||||| |||||||  |||||||||    
T  17073067 ttgatatctcttttgtaaggttactcatcattatagtaaaacggagggctgctctc 17073122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 375
Target Start/End: Complemental strand, 2144684 - 2144603
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttg-atatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||| | ||| ||||||||||||  |||||||||| ||||| ||| |||||||||||||| ||||||  |||||||||    
T  2144684 gtttgaagactaattcttgtaaccttttttatatctcttt-gtaaagttactcatcattatagtggaacggagggctgctctc 2144603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 16092305 - 16092251
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  |||| |||||||||||||  ||| |||||||||||||||||||||    
T  16092305 ttgtaacccattgagatctcttttgtaaggttactcatcattatagtgaaacgga 16092251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 658458 - 658394
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  658458 ttgtaacccattgatatctcttttgtaacgttactcatca-tatagtgaaacggatggctgctctc 658394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 10474432 - 10474364
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||  |||||||||||||| |||  ||| |||||| ||||||||||||||  |||||||||    
T  10474432 atttttgtaacccattgatatctcttttctaaggttactcatca-tatagtgaaacggatggctgctctc 10474364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 20505936 - 20505869
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||||||||||||  ||| |||||| ||||||||||||||  ||||||||| || ||||||||||    
T  20505936 ttgatatctcttttgtaacgttactcatca-tatagtgaaacggagggctgctctc-ccccagactaggt 20505869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 21948200 - 21948264
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  21948200 ttgtaaccccttgatatctcttttgtaacgttactcatca-tatagtgaaacggagggctgctctc 21948264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 42770984 - 42771024
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcat 350  Q
    ||||||||| ||||||||||||||||||| ||| |||||||    
T  42770984 ttgtaacctattgatatctcttttgtaaagttactcatcat 42771024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 22874276 - 22874345
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||| || ||||||||||    
T  22874276 atttttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaactgagagctgctctc 22874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 15694038 - 15694108
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  15694038 gtttgaagactaattcttgtaaccttttgatatctcttttgtaaagttactcatcattttagtggaacgga 15694108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 6264254 - 6264189
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||  |||||||||    
T  6264254 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtgaaacggagggctgctctc 6264189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 375
Target Start/End: Original strand, 35028706 - 35028790
Alignment:
Q  291 tatgtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||| | | ||| |||||||||||| ||||||||||| |||||||| ||||||||  |||| |||||| ||||||||||    
T  35028706 tatgtttgaatactaattcttgtaaccttttaatatctcttttctaaaattactcatcattgcagtggaacggagagctgctctc 35028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 6258922 - 6258843
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||  ||||||||||||||||||| ||| |||| ||||||||||||||||  ||||||||| || || |||||||    
T  6258922 ttgtaacccattgatatctcttttgtaaagttactcattattatagtgaaacggagggctgctctctccccatactaggt 6258843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 17897351 - 17897272
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    |||||||| |||||||||| ||||||||| ||| |||||||||||||  ||||||  ||||||||| || ||||||||||    
T  17897351 ttgtaaccctttgatatctattttgtaaagttactcatcattatagtagaacggatggctgctctctccccagactaggt 17897272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 40699508 - 40699571
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||| | |||||||||| | |||||||||||||||||||| ||| ||||||||||||||    
T  40699508 gtttgaagacttatttttgtaatcctttgatatctcttttgtaaagttactcatcattatagtg 40699571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 13828467 - 13828401
Alignment:
Q  291 tatgtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    |||||||||||| | ||| ||||| || |||||||||||||||||||||||| |||| |||||||||    
T  13828467 tatgtttgaagacttattcttgtagccctttgatatctcttttgtaaaattactcataattatagtg 13828401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 17849263 - 17849320
Alignment:
Q  306 atttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgg 363  Q
    ||||||||||||  ||||||||||||||||||  ||| ||||||||||||||||||||    
T  17849263 atttttgtaacccattgatatctcttttgtaaggttactcatcattatagtgaaacgg 17849320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 20146714 - 20146649
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||  |||||||||||||||||||| ||| |||||||||||||| ||||||  |||||||||    
T  20146714 ttgtaactctttgatatctcttttgtaaagttactcatcattatagtggaacggagggctgctctc 20146649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 18800419 - 18800340
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||  ||||||||||||||||||| ||| || ||||||||||||||||||  ||| ||||| || ||||| ||||    
T  18800419 ttgtaacccattgatatctcttttgtaaagttactcgtcattatagtgaaacggagggctactctctccccagaccaggt 18800340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 44289173 - 44289122
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaac 361  Q
    ||||||||  |||||||||||||||||| |||| ||||||||||||||||||    
T  44289173 ttgtaacccgttgatatctcttttgtaagattactcatcattatagtgaaac 44289122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 28459295 - 28459241
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  |||||||||||||| |||| ||| |||||||||||||||||||||    
T  28459295 ttgtaacccattgatatctcttttttaaagttactcatcattatagtgaaacgga 28459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 31732882 - 31732828
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||| ||||||||||    
T  31732882 ttgtaacccattgatatctcttttgtaaagttactcatcattattgtgaaacgga 31732828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 375
Target Start/End: Original strand, 28196775 - 28196851
Alignment:
Q  298 gaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||| ||| ||||||||  |||||||||||||||||| |||| |||||| |||||||||||| |  |||||||||    
T  28196775 gaagatttattcttgtaacccattgatatctcttttgtaacattactcatca-tatagtgaaacgaatggctgctctc 28196851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 45239082 - 45239018
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  |||||||||    
T  45239082 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctc 45239018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 14837427 - 14837471
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||    
T  14837427 ttgatatctcttttgtaaggttactcatcattatagtgaaacgga 14837471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 33604056 - 33604125
Alignment:
Q  294 gtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||| | ||| || |||||||||||||| ||||| ||||| ||| |||||||||||||| ||||||    
T  33604056 gtttgaagactaattcttctaaccttttgatatatcttt-gtaaagttactcatcattatagtggaacgga 33604125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 5375451 - 5375387
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  |||||||||||||||||| |||| |||||| ||||||| ||||||  |||||||||    
T  5375451 ttgtaacccattgatatctcttttgtaacattactcatca-tatagtggaacggagggctgctctc 5375387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 21520798 - 21520734
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  21520798 ttgtaacccattgatatctcttttgtaacgttactcatca-tatagtgaaacggatggctgctctc 21520734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 22407559 - 22407495
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||  ||| |||||| ||||||||||||||  |||||||||    
T  22407559 ttgtaacccattgatatctcttttgtaacgttactcatca-tatagtgaaacggagggctgctctc 22407495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 35107430 - 35107498
Alignment:
Q  295 tttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||  ||| |||||||||||||| ||||||    
T  35107430 tttgaagacttattcttgtaaccttt-gttatctcttttgtaatgttactcatcattatagtggaacgga 35107498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 39287262 - 39287307
Alignment:
Q  330 ttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||||||| |||||||||||||| |||| | ||||||||||    
T  39287262 ttttgtaaaattactcatcattatagtggaacgaagagctgctctc 39287307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 375
Target Start/End: Complemental strand, 41303156 - 41303074
Alignment:
Q  291 tatgtttgaagattgatttttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    |||||||||||| |||||  ||||||||||||  ||||  |||||||| ||| |||||||||||||| ||| || ||||| ||||    
T  41303156 tatgtttgaagactgattcatgtaaccttttggaatct--tttgtaaagttactcatcattatagtggaacagagagctgttctc 41303074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 20589851 - 20589895
Alignment:
Q  320 ttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    |||||||||||||||| || ||| |||||||||||||| ||||||    
T  20589851 ttgatatctcttttgtgaagttactcatcattatagtgtaacgga 20589895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 4179 - 4257
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctcaccacagactaggt 389  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||||||||||  ||||||||| || ||||||||||    
T  4179 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtgaaacggagggctgctctctccccagactaggt 4257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 1748 - 1683
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgctctc 375  Q
    ||||||||  ||||||||||||||||||| ||| |||||||||||||| |||| |  |||||||||    
T  1748 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtggaacgtagggctgctctc 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 16756 - 16709
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtg 357  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||||||||    
T  16756 ttgtaacccattgatatctcttttgtaaagttactcatcattatagtg 16709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Complemental strand, 15927 - 15873
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||||||||| ||| ||||||||| |||| ||||||    
T  15927 ttgtaacccattgatatctcttttgtaaagttactcatcattagagtggaacgga 15873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 15202 - 15263
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacggaaagctgct 372  Q
    ||||||||  ||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||    
T  15202 ttgtaacccattgatatctcttttgtaaagttactcatca-tatagtggaacggaaggctgct 15263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 85413 - 85467
Alignment:
Q  310 ttgtaaccttttgatatctcttttgtaaaattattcatcattatagtgaaacgga 364  Q
    ||||||||  ||||||||||||| ||||| ||| |||||||||||||| ||||||    
T  85413 ttgtaacccattgatatctctttcgtaaagttactcatcattatagtggaacgga 85467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University