View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8220_high_7 (Length: 239)
Name: NF8220_high_7
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 11225135 - 11225352
Alignment:
| Q |
4 |
tataagagttacacattgttgataaaattctgcgagctgatgtttgatgtgtatctgaatgtaagttgcttgcttaattgaaaaggattctgcaaactga |
103 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
11225135 |
tataagagttacacattgttgataaa-ttctgcgaactaatgtttgatgtgtacctgaatgtaagttggttgtttaattgaaaaggattctgcaaactga |
11225233 |
T |
|
| Q |
104 |
tggaaaaagatagttgtaaatatgcttttgggtgtgttggttgattaaatgttatgcatgtagtacaagtgttacgcattgttgacaaaattctgagaac |
203 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||| | ||||||||| ||||||||| ||| |
|
|
| T |
11225234 |
tggaaaaagatagctgtaaatatacttttgggtgtgttgattgattaaatgttatgcatgtactataagtgttgcacattgttgataaaattctggaaac |
11225333 |
T |
|
| Q |
204 |
tgattgtaaaatcaaaatt |
222 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11225334 |
tgattgtaaaatcaaaatt |
11225352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 11225365 - 11225546
Alignment:
| Q |
44 |
tgtttgatgtgtatctgaatgtaagttgcttgcttaattgaaaaggattctgcaaactgatggaaaaagatagttgtaaatatgcttttgggtgtgttgg |
143 |
Q |
| |
|
||||| ||||||| ||||||||||| || || |||||| ||||||||||||||| |||| |||||| |||| ||||| ||| |||||||||||||||| |
|
|
| T |
11225365 |
tgtttaatgtgtacctgaatgtaagctgattatttaattcaaaaggattctgcaagttgattgaaaaatatagctgtaagtatacttttgggtgtgttgg |
11225464 |
T |
|
| Q |
144 |
ttgattaaatgttatgcatgtagtacaagtgttacgcattgttgacaaaattctgagaactgattgtaaaatcaaaattatg |
225 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11225465 |
ttgattaaatgttgtgcatgtagtacaagtgttacgcattcttgacaaaattctgagaactgattgtaaaatcaaaattatg |
11225546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 11224891 - 11225000
Alignment:
| Q |
113 |
atagttgtaaatatgcttttgggtgtgttg-gttgattaaatgttatgcatgtagtacaagtgttacgcattgttgacaaaattctgagaactgattgta |
211 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||||||||||||| ||||||||||| ||| ||||| ||||||||| || |||||| ||||||||| | |
|
|
| T |
11224891 |
atagttgtaagtatacttttgggtgtgttaagttgattaaatgttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgattaca |
11224989 |
T |
|
| Q |
212 |
aaatcaaaatt |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
11224990 |
aaatcaaaatt |
11225000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 11225012 - 11225156
Alignment:
| Q |
44 |
tgtttgatgtgtatctgaatgtaagttgcttgcttaattgaaaaggattctgcaaactgatggaaaaagatagttgtaaatatgcttttgggtgtgttgg |
143 |
Q |
| |
|
||||| |||| || |||| |||||| || ||| ||||||||||| ||||||||||| | || ||||||||| | ||||| ||| |||| || ||||||| |
|
|
| T |
11225012 |
tgtttaatgtttacctgattgtaagctgattgtttaattgaaaaagattctgcaaattaattgaaaaagatggatgtaagtatactttaaggcgtgttgg |
11225111 |
T |
|
| Q |
144 |
ttgattaaatgttatgcatgtagtacaagtgttacgcattgttga |
188 |
Q |
| |
|
||||||| ||||| | ||||||||| ||| ||||| ||||||||| |
|
|
| T |
11225112 |
ttgattatatgttgttcatgtagtataagagttacacattgttga |
11225156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University