View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8220_low_1 (Length: 677)

Name: NF8220_low_1
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8220_low_1
NF8220_low_1
[»] chr3 (21 HSPs)
chr3 (57-662)||(7419369-7419979)
chr3 (460-658)||(32240521-32240720)
chr3 (57-190)||(12285298-12285427)
chr3 (57-190)||(19586864-19586993)
chr3 (193-372)||(6777142-6777321)
chr3 (193-372)||(1596956-1597137)
chr3 (190-372)||(19197155-19197337)
chr3 (1-57)||(4454419-4454475)
chr3 (246-374)||(12073409-12073537)
chr3 (1-54)||(4433627-4433680)
chr3 (203-357)||(34438509-34438664)
chr3 (1-57)||(18888258-18888314)
chr3 (1-57)||(18902659-18902715)
chr3 (1-56)||(18892485-18892540)
chr3 (3-56)||(22058029-22058082)
chr3 (3-56)||(39705045-39705098)
chr3 (466-551)||(32223351-32223439)
chr3 (1-57)||(40999139-40999195)
chr3 (1-57)||(41007923-41007979)
chr3 (1-59)||(13509424-13509482)
chr3 (377-418)||(32240728-32240769)
[»] scaffold0329 (1 HSPs)
scaffold0329 (57-190)||(11007-11136)
[»] chr4 (14 HSPs)
chr4 (57-190)||(22177095-22177224)
chr4 (190-372)||(32308484-32308666)
chr4 (190-372)||(42705854-42706036)
chr4 (193-368)||(39464674-39464849)
chr4 (2-56)||(771295-771349)
chr4 (1-57)||(20867826-20867882)
chr4 (3-57)||(1877725-1877779)
chr4 (3-56)||(1891840-1891893)
chr4 (190-351)||(3680166-3680327)
chr4 (62-152)||(10866920-10867010)
chr4 (64-152)||(23167608-23167696)
chr4 (62-152)||(10652775-10652865)
chr4 (60-150)||(35087238-35087328)
chr4 (62-152)||(5239378-5239468)
[»] chr1 (12 HSPs)
chr1 (57-190)||(52777678-52777807)
chr1 (193-368)||(48998432-48998607)
chr1 (2-56)||(13806246-13806300)
chr1 (246-369)||(43783477-43783600)
chr1 (3-57)||(34584383-34584437)
chr1 (2-58)||(23950149-23950206)
chr1 (2-57)||(28993528-28993584)
chr1 (193-316)||(40555137-40555255)
chr1 (62-152)||(2359595-2359685)
chr1 (4-56)||(13450035-13450087)
chr1 (94-191)||(30756167-30756260)
chr1 (94-191)||(30763619-30763712)
[»] chr2 (10 HSPs)
chr2 (190-372)||(31117608-31117790)
chr2 (258-372)||(18205229-18205343)
chr2 (519-643)||(40879047-40879171)
chr2 (3-57)||(34529949-34530003)
chr2 (3-56)||(34543922-34543975)
chr2 (225-368)||(28034970-28035113)
chr2 (3-57)||(26719718-26719772)
chr2 (3-57)||(26733807-26733861)
chr2 (57-149)||(29499478-29499570)
chr2 (86-129)||(20483871-20483914)
[»] scaffold0251 (1 HSPs)
scaffold0251 (193-372)||(17686-17865)
[»] chr5 (6 HSPs)
chr5 (193-372)||(2742317-2742496)
chr5 (203-368)||(13273480-13273645)
chr5 (533-660)||(9620060-9620187)
chr5 (519-662)||(9624450-9624595)
chr5 (559-640)||(17389982-17390063)
chr5 (86-129)||(16991036-16991079)
[»] chr8 (5 HSPs)
chr8 (193-366)||(37228442-37228615)
chr8 (194-368)||(14096332-14096506)
chr8 (3-57)||(16759323-16759377)
chr8 (3-57)||(16773207-16773261)
chr8 (4-56)||(17527054-17527106)
[»] chr6 (13 HSPs)
chr6 (194-372)||(35013692-35013870)
chr6 (1-56)||(14473713-14473768)
chr6 (3-58)||(19828559-19828614)
chr6 (2-56)||(20532659-20532713)
chr6 (3-57)||(27549639-27549693)
chr6 (3-56)||(27535429-27535482)
chr6 (4-56)||(25690774-25690826)
chr6 (4-56)||(25697567-25697619)
chr6 (296-372)||(6286541-6286618)
chr6 (95-156)||(20699447-20699508)
chr6 (95-150)||(28939230-28939285)
chr6 (62-152)||(14814836-14814926)
chr6 (4-57)||(25711753-25711806)
[»] chr7 (8 HSPs)
chr7 (232-369)||(12626749-12626886)
chr7 (262-372)||(21063197-21063307)
chr7 (3-57)||(1888902-1888956)
chr7 (3-56)||(1903003-1903056)
chr7 (2-54)||(4662826-4662878)
chr7 (3-56)||(24188100-24188153)
chr7 (193-352)||(38456829-38456987)
chr7 (6-57)||(12661954-12662005)
[»] scaffold0408 (1 HSPs)
scaffold0408 (194-368)||(6674-6847)
[»] scaffold1312 (1 HSPs)
scaffold1312 (1-56)||(1576-1631)
[»] scaffold0018 (1 HSPs)
scaffold0018 (232-349)||(181074-181191)
[»] scaffold0545 (1 HSPs)
scaffold0545 (3-57)||(10004-10058)
[»] scaffold0088 (1 HSPs)
scaffold0088 (60-152)||(52410-52502)
[»] scaffold0010 (1 HSPs)
scaffold0010 (301-356)||(32994-33049)


Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 57 - 662
Target Start/End: Complemental strand, 7419979 - 7419369
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7419979 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttagatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 7419880  T
Q  157 taattgtaagaaagtatttgtgaccatgtacagaacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaa 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7419879 taattgtaagaaagtatctgtgaccatgtacagaacgccttaatataggccaacctaacatgagctcgctcgtcttgctcctcatgtgcgtcaggctcaa 7419780  T
Q  257 acaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagc 356  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7419779 acaactgattacacctattcaagagctcctcgtagcgcctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgccacctccttagcggcagc 7419680  T
Q  357 ttccgctgtaaaaagttggaagctcctcatatgctgacatattaaaaggaaagtttttaatttagtagaatatattttt---ctacttgtacc--nnnnn 451  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   || ||||||||           
T  7419679 atccgctgtaaaaagttggaagctcctcatatgctgacatattaaaaggaaagtttttaatttagtagaatatctttttttactgcttgtaccaaaaaaa 7419580  T
Q  452 nnntatatatatcttttttctacctgtttttattgatcacctttgatttttcttcttatgttgattcacatagttccgttaaacttataaattgttgatt 551  Q
       ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7419579 aaatatatatatcttttttctacctgtttttattgattttctttgatttttcttcttatgttgattcacatagttccgttaaacttataaattgttgatt 7419480  T
Q  552 cgacttactgaagttaggttacacatgtgcttgaaattgcttgcatcttagtttaacttggctcttgataccatttattggtaattaaaacagccttcta 651  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7419479 agacttactgaagttaggttacacatgtgcttgaaattgctagcatcttagtttaacttggctcttgataccatttattggtaattaaaacagccttcta 7419380  T
Q  652 cataaatatgg 662  Q
    |||||||||||    
T  7419379 cataaatatgg 7419369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 460 - 658
Target Start/End: Complemental strand, 32240720 - 32240521
Alignment:
Q  460 atatcttttttctacctgtttttattgatca-cctttgatttttcttcttatgttgattcacatagttccgttaaacttataaattgttgattcgactta 558  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  32240720 atatcttttttctacctgtttttattgatcaacctttgatttttcttcttctattggttcacatagttccgttaaacttataaattgttgattagactta 32240621  T
Q  559 ctgaagttaggttacacatgtgcttgaaattgcttgcatcttagtttaacttggctcttgataccatttattggtaattaaaacagccttctacataaat 658  Q
    || |||||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  32240620 ctcaagttaggttactcatgtgcttgaaattgctggcatcttagttcaactaggctcttgataccatttcttggtaattaaaacagccttctagataaat 32240521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 12285427 - 12285298
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12285427 gtgtttgaatcatagtgatgaaattgatgacatgtgtagaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 12285328  T
Q  157 taattgtaagaaagtatttgtgaccatgtacaga 190  Q
         |||||||||||| ||||||||||||||||    
T  12285327 a----gtaagaaagtatctgtgaccatgtacaga 12285298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 19586864 - 19586993
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19586864 gtgtttgaatcatagtgatgaaattgatgacatgtgtagaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 19586963  T
Q  157 taattgtaagaaagtatttgtgaccatgtacaga 190  Q
         |||||||||||| ||||||||||||||||    
T  19586964 a----gtaagaaagtatctgtgaccatgtacaga 19586993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 372
Target Start/End: Complemental strand, 6777321 - 6777142
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||| |||||| | ||||| ||||||| ||||||| | || ||||||| ||| || |||||||||| || | || |||||||||||||    
T  6777321 gccttaatgcaggccagcctaacttcagctcgctcgtctagctcctcctatgtgtcaggcacaagcagctgattacacatattgaaaagctcctcgtagc 6777222  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
     |||||| |||  |||||||||||| ||||||  ||| |||||||||| ||||||||||||||| |||||||||||||||    
T  6777221 gcctcttaagtacaccaaaactgatgtgagcaataccctgtcttgtcagctccttagcggcagcctccgctgtaaaaagt 6777142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 1596956 - 1597137
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||| |||||| | ||||| ||||||| ||||||| | || | ||||| ||| || ||||||||||||| |||| |||||||||||||    
T  1596956 gccttaatgcaggccagcctaacttcagctcgctcgtctcgctcctcctttgtgccaggcacaagcagctgattacacctattcaaaagctcctcgtagc 1597055  T
Q  293 ac--ctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
     |  ||||| |||  |||||||||||| ||||||||||| ||| |||||| ||||||||||||| | | |||||||||||||    
T  1597056 gctcctcttaagtacaccaaaactgatgtgagcagcaccctgttttgtcagctccttagcggcaaccttcgctgtaaaaagt 1597137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 190 - 372
Target Start/End: Complemental strand, 19197337 - 19197155
Alignment:
Q  190 aacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgt 289  Q
    |||||||||||| ||||||||||||| ||||    ||| || |||||||| | || |||| | |||| || ||||||||||| | | |||||||||||||    
T  19197337 aacgccttaatacaggccaacctaacttgagtctgctcctcatgctcctcctctgtgtcaagttcaatcagctgattacacccattgaagagctcctcgt 19197238  T
Q  290 agcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    | | |||| | ||| |||||||||||| |||||||||||| ||||||  |||||||||||  ||| | |||||||||||||||    
T  19197237 aacgcctcctcagtttaccaaaactgaaatgagcagcaccttgtcttcccacctccttagtagcaacctccgctgtaaaaagt 19197155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4454475 - 4454419
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4454475 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 4454419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 12073537 - 12073409
Alignment:
Q  246 gtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctcc 345  Q
    ||||||||||| || ||||||||||||| ||||||||| |||||| | |||||| ||| |||||||||||| |||||| ||||| ||| ||  |||||||    
T  12073537 gtcaggctcaagcagctgattacacctattcaagagctactcgtaccgcctcttcagtttaccaaaactgacatgagccgcaccttgttttcccacctcc 12073438  T
Q  346 ttagcggcagcttccgctgtaaaaagttg 374  Q
    |||||  || | |||||||||||||||||    
T  12073437 ttagcaacaacctccgctgtaaaaagttg 12073409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4433680 - 4433627
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatga 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4433680 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatga 4433627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 34438509 - 34438664
Alignment:
Q  203 aggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgag 302  Q
    |||||| |||||| | ||||| ||||||||||||||| ||||  |||| | ||| || ||| ||||||||| |||||||||||||||||| |||||| ||    
T  34438509 aggccagcctaacttcagctcgctcgtcttgctcctcctgtgtatcagtcacaagcagctggttacacctattcaagagctcctcgtagcgcctcttcag 34438608  T
Q  303 tgtaccaaaactgatatgagcagca-ccatgtcttgtcacctccttagcggcagct 357  Q
    |  | |||||||||  |||||| || || ||| |||||| ||||||||||||||||    
T  34438609 tacatcaaaactgacgtgagcaacacccttgttttgtcatctccttagcggcagct 34438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18888258 - 18888314
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  18888258 tcagagtcaaaccacgcacgttcgtgggatccttggtcaaaatttagggtatgacag 18888314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18902659 - 18902715
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  18902659 tcagagtcaaaccacgcacgttcgtgggatccttggtcaaaatttagggtatgacag 18902715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18892485 - 18892540
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  18892485 tcagagtcaaacgatgcacgttcgtgggatccttggtcaaaatttagggtatgaca 18892540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 22058082 - 22058029
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  22058082 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgaca 22058029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 39705098 - 39705045
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  39705098 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgaca 39705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 32223439 - 32223351
Alignment:
Q  466 tttttctacctgtttttattgatca-cctttgatttttctt--cttatgttgattcacatagttccgttaaacttataaattgttgatt 551  Q
    ||||||||| ||||||||||||||| ||| |||||||| ||  ||| ||||| ||| | ||||||||||||||||||||||||||||||    
T  32223439 tttttctacatgtttttattgatcaacctatgattttttttttcttctgttggttctcctagttccgttaaacttataaattgttgatt 32223351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40999195 - 40999139
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||||| ||||||| ||| |||  |||||||||||||||||||||||||    
T  40999195 tcagagtcaaacgatgcacgtctgtgagatttttggtcaaaatttagggtatgacag 40999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41007979 - 41007923
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||||| ||||||| ||| |||  |||||||||||||||||||||||||    
T  41007979 tcagagtcaaacgatgcacgtctgtgagatttttggtcaaaatttagggtatgacag 41007923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13509424 - 13509482
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacagtg 59  Q
    ||||||||||| ||||| |||| |||||| | | |||||||||||||||||||||||||    
T  13509424 tcagagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgacagtg 13509482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 32240769 - 32240728
Alignment:
Q  377 agctcctcatatgctgacatattaaaaggaaagtttttaatt 418  Q
    |||||||||||| |||||||||||||||  ||||||||||||    
T  32240769 agctcctcatatactgacatattaaaagcgaagtttttaatt 32240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 11136 - 11007
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11136 gtgtttgaatcatagtgatgaaattgatgacatgtgtagaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 11037  T
Q  157 taattgtaagaaagtatttgtgaccatgtacaga 190  Q
         |||||||||||| ||||||||||||||||    
T  11036 a----gtaagaaagtatctgtgaccatgtacaga 11007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 22177095 - 22177224
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22177095 gtgtttgaatcatagtgatgaaattgatgacatgtgtagaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 22177194  T
Q  157 taattgtaagaaagtatttgtgaccatgtacaga 190  Q
         |||||||||||| ||||||||||||||||    
T  22177195 a----gtaagaaagtatctgtgaccatgtacaga 22177224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 372
Target Start/End: Original strand, 32308484 - 32308666
Alignment:
Q  190 aacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgt 289  Q
    |||||||||||  ||||||||||||| ||||||  ||| |||| |||||| | || ||||||| |||||| ||| ||||||||| |||||||||||| ||    
T  32308484 aacgccttaatgcaggccaacctaacttgagcttgctcctctttctcctcctctgtgtcaggcacaaacagctggttacacctattcaagagctccttgt 32308583  T
Q  290 agcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    | | | |||| |||| ||||||||||||||||| |||||| | |||||||| ||||||| ||||||| |||||||||||||||    
T  32308584 accgcgtcttcagtgcaccaaaactgatatgagaagcaccctatcttgtcagctccttaccggcagcctccgctgtaaaaagt 32308666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 190 - 372
Target Start/End: Original strand, 42705854 - 42706036
Alignment:
Q  190 aacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgt 289  Q
    |||||||||||  |||||| ||||||  |||||  ||| ||||||||||| | || ||||| | ||| || ||| ||||||||| | |||||||||||||    
T  42705854 aacgccttaatgcaggccagcctaactcgagcttgctcctcttgctcctcctttgtgtcagacacaagcagctggttacacctattgaagagctcctcgt 42705953  T
Q  290 agcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    |||||||||| |||| ||||||| |||| ||||||||||| | |||||||| ||||||||||||||| |||||||||||||||    
T  42705954 agcacctcttcagtgcaccaaaattgatgtgagcagcaccctatcttgtcagctccttagcggcagcctccgctgtaaaaagt 42706036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 193 - 368
Target Start/End: Complemental strand, 39464849 - 39464674
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||| |||||| |||||| | ||||| ||||||||||||||  | || ||||  | ||| || ||| ||||||||| ||||||| ||||||||||    
T  39464849 gccttaatacaggccagcctaacttcagctcgctcgtcttgctccttctatgtgtcattcacaagcagctggttacacctattcaagagttcctcgtagc 39464750  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
    ||||||| |||  |||||||||||  ||||||||||| ||| |||||| ||||||||||||||| ||| |||||||    
T  39464749 acctcttcagtacaccaaaactgacgtgagcagcaccctgttttgtcatctccttagcggcagcctcctctgtaaa 39464674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 771349 - 771295
Alignment:
Q  2 cagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  771349 cagagtcaaacgacgcgcgtccgtgggatccttggtcaaaatttagggtatgaca 771295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20867826 - 20867882
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  20867826 tcagagtcaaacgacgcgcgtctgtgggatctttggtcaaaatttagggtatgacag 20867882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1877725 - 1877779
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  1877725 agagtcaaacaacgcgtgtccgtgggatccttggtcaaaatttagggtatgacag 1877779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1891840 - 1891893
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  1891840 agagtcaaacaacgcgtgtccgtgggatccttggtcaaaatttagggtatgaca 1891893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 351
Target Start/End: Complemental strand, 3680327 - 3680166
Alignment:
Q  190 aacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgt 289  Q
    |||||||||||  |||||||||||||  |||||  ||  ||||||||||| | || ||||||| ||| || ||| ||||||||| |||||||||||||||    
T  3680327 aacgccttaatgcaggccaacctaactcgagctttcttctcttgctcctcctctgtgtcaggcacaagcagctggttacacctattcaagagctcctcgt 3680228  T
Q  290 agcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcg 351  Q
    | | | |||| |||  | ||||| |||| |||||| |||  ||| |||||| ||||||||||    
T  3680227 accgcgtcttcagtaaatcaaaattgatgtgagcaacactctgttttgtcagctccttagcg 3680166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 10867010 - 10866920
Alignment:
Q  62 tgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    ||||||||||| || |||||  | ||||||| ||| ||||||||||||| |||||| | ||| ||||| ||||||||||| ||||||||||    
T  10867010 tgaatcatagtaataaaattcttaacatgtgaagacacttcagctttggttttaagaagaatgacccagagaaatctgctgtgatcatcta 10866920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 23167608 - 23167696
Alignment:
Q  64 aatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    |||||||||||| || ||  | |||||||| |||||||||||||||| |||||| | ||| | |||||| ||||| |||||||||||||    
T  23167608 aatcatagtgataaagtttttaacatgtgtggaaacttcagctttggttttaaggagaataatccaaaggaatctactatgatcatcta 23167696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 10652865 - 10652775
Alignment:
Q  62 tgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    ||||||||||| || |||||  | ||||||  ||| ||||||||||||| |||||| | ||| ||||| ||||||||||| ||||||||||    
T  10652865 tgaatcatagtaataaaattcttaacatgtaaagacacttcagctttggttttaagaagaatgacccagagaaatctgctgtgatcatcta 10652775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 35087328 - 35087238
Alignment:
Q  60 tttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatc 150  Q
    ||||||||||||| || |||||  |||||||   ||| |||||||||||||  ||||||||||| | |||||| ||||||||||| |||||    
T  35087328 tttgaatcatagtaatgaaatttttgacatggagagagacttcagctttggtcttaagtaaaataatccaaaggaatctgctatggtcatc 35087238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 5239468 - 5239378
Alignment:
Q  62 tgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    ||||||||||| || |||||  | ||||||| ||| ||||||||||||| |||||| | ||| ||||| ||||||||| | || |||||||    
T  5239468 tgaatcatagtaataaaattcttaacatgtgaagacacttcagctttggttttaagaagaatgacccagagaaatctggtgtggtcatcta 5239378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 52777807 - 52777678
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52777807 gtgtttgaatcatagtgatgaaattgatgacatgtgtagaaacttctgctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 52777708  T
Q  157 taattgtaagaaagtatttgtgaccatgtacaga 190  Q
         |||||||||||| ||||||||||||||||    
T  52777707 a----gtaagaaagtatctgtgaccatgtacaga 52777678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 193 - 368
Target Start/End: Complemental strand, 48998607 - 48998432
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  ||| || |||||| | ||||| ||||||||||||||| |||| || || | ||| || ||| ||||||||| |||||||||||||| |||    
T  48998607 gccttaatgcaggtcagcctaacttcagctcgctcgtcttgctcctcctgtgtgttagtcacaagcagctggttacacctattcaagagctcctcgcagc 48998508  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
     |||||| |||  |||||||||||  |||||| |||| | | |||||| ||||||||||||||| ||| |||||||    
T  48998507 gcctcttcagtacaccaaaactgacgtgagcaacaccctattttgtcatctccttagcggcagcctcctctgtaaa 48998432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 13806246 - 13806300
Alignment:
Q  2 cagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13806246 cagagtcagacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 13806300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 246 - 369
Target Start/End: Original strand, 43783477 - 43783600
Alignment:
Q  246 gtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctcc 345  Q
    |||||||| || || ||||||||||||| |||||| |||||| |||  |||||| ||| |||||||||||| ||||||| |||| || |||  |||||||    
T  43783477 gtcaggctgaagcagctgattacacctattcaagaactcctcatagtgcctcttcagtttaccaaaactgacatgagcaacaccttgccttcacacctcc 43783576  T
Q  346 ttagcggcagcttccgctgtaaaa 369  Q
    ||||| ||||| ||||| ||||||    
T  43783577 ttagcagcagcctccgcggtaaaa 43783600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 34584437 - 34584383
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  34584437 agagtcaaatgacgcgcgtccgtgggatccttggtcaaaatttagggtatgacag 34584383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 23950206 - 23950149
Alignment:
Q  2 cagagtcaaacgac-gcacgtccgtgggatccttggtcaaaatttagggtatgacagt 58  Q
    |||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||    
T  23950206 cagagtcaaacgaatgcacgtccgtgggatctttggtcaaaaattagggtatgacagt 23950149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 28993528 - 28993584
Alignment:
Q  2 cagagtcaaacgac-gcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||    
T  28993528 cagagtcaaacgaatgcacgtccgtgggatctttggtcaaaaattagggtatgacag 28993584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 40555137 - 40555255
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||||||||||   ||||| ||||||||||||||| |||| ||||| | ||| || ||| ||||||     ||||||| |||||||||    
T  40555137 gccttaatgcaggccaacctaactccagctcgctcgtcttgctcctcctgtgtgtcagtcacaagcagctggttacac-----caagagcgcctcgtagc 40555231  T
Q  293 acctcttgagtgtaccaaaactga 316  Q
    ||||||| |||  |||||||||||    
T  40555232 acctctttagtacaccaaaactga 40555255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 2359685 - 2359595
Alignment:
Q  62 tgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    ||||||||||| || |||||  | ||||||| ||| ||||||||||||| |||||| | ||| ||||| ||||||||| | || |||||||    
T  2359685 tgaatcatagtaataaaattcttaacatgtgaagacacttcagctttggttttaagaagaatgacccagagaaatctggtgtggtcatcta 2359595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 13450087 - 13450035
Alignment:
Q  4 gagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||| ||||| |||| |||||| | | ||||||||||||||||||||||    
T  13450087 gagtcaaatgacgcgcgtcagtgggaccttaggtcaaaatttagggtatgaca 13450035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 30756167 - 30756260
Alignment:
Q  94 agaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaattaattgtaagaaagtatttgtgaccatgtacagaa 191  Q
    ||||||||||||||||| || ||| | ||| | ||||||||| ||  |||||||||| |||||     ||||| ||||||||||||||||| ||||||    
T  30756167 agaaacttcagctttgggttcaaggagaataatccaaagaaacctattatgatcatcaacaatg----gtaaggaagtatttgtgaccatgaacagaa 30756260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 30763619 - 30763712
Alignment:
Q  94 agaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaattaattgtaagaaagtatttgtgaccatgtacagaa 191  Q
    ||||||||||||||||| || ||| | ||| | ||||||||| ||  |||||||||| |||||     ||||| ||||||||||||||||| ||||||    
T  30763619 agaaacttcagctttgggttcaaggagaataatccaaagaaacctattatgatcatcaacaatg----gtaaggaagtatttgtgaccatgaacagaa 30763712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 190 - 372
Target Start/End: Original strand, 31117608 - 31117790
Alignment:
Q  190 aacgccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgt 289  Q
    |||||||||||| |||||||||   | ||||||  || |||||| |||||||||| |||| ||| || || ||||||||||||| || ||||||||||||    
T  31117608 aacgccttaatacaggccaaccattcttgagcttgcttgtcttgatcctcatgtgtgtcaagctgaagcagctgattacacctattctagagctcctcgt 31117707  T
Q  290 agcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||    
T  31117708 agcacctgttcagtgtaccaaaactgatatgagcagcaccctgtcttgccacctccttagcgacagcctccgctgtaaaaagt 31117790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 258 - 372
Target Start/End: Original strand, 18205229 - 18205343
Alignment:
Q  258 caactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagct 357  Q
    ||||| ||||||| || ||||||||||||| | || |||||| ||| |||||||||||| |||||||||||| ||||||  |||||||||||  |||||     
T  18205229 caactaattacacatattcaagagctcctcatggcgcctctttagtttaccaaaactgacatgagcagcaccttgtcttcccacctccttagtagcagca 18205328  T
Q  358 tccgctgtaaaaagt 372  Q
    |||||||||||||||    
T  18205329 tccgctgtaaaaagt 18205343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 519 - 643
Target Start/End: Complemental strand, 40879171 - 40879047
Alignment:
Q  519 acatagttccgttaaacttataaattgttgattcgacttactgaagttaggttacacatgtgcttgaaattgcttgcatcttagtttaacttggctcttg 618  Q
    |||||||||| |  ||||| ||||||||||||| ||||| |||||||| |||||| | |||||||||| ||| |  |||||||||| ||| |||||||||    
T  40879171 acatagttccatcgaacttgtaaattgttgattagacttgctgaagttgggttactcctgtgcttgaatttgttgccatcttagttcaacctggctcttg 40879072  T
Q  619 ataccatttattggtaattaaaaca 643  Q
    ||||||||| |||  ||||||||||    
T  40879071 ataccattttttgacaattaaaaca 40879047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34529949 - 34530003
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  34529949 agagtcaaatgacgcgcgtccgtgggatccttggtcaaaatttagggtatgacag 34530003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 34543922 - 34543975
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  34543922 agagtcaaatgacgcgcgtccgtgggatccttggtcaaaatttagggtatgaca 34543975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 225 - 368
Target Start/End: Complemental strand, 28035113 - 28034970
Alignment:
Q  225 ctcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagca 324  Q
    ||||||||||||||| |||| ||||| | ||| || ||| ||||||||| ||||||||| |||||||| |||| | | |  ||||||||| |   |||||    
T  28035113 ctcgtcttgctcctcttgtgtgtcagtcacaagcagctggttacacctattcaagagcttctcgtagcgcctcatcaatacaccaaaactaacgagagca 28035014  T
Q  325 gcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
     |||  |||||||||| ||||||||||||||| ||| |||||||    
T  28035013 acactctgtcttgtcatctccttagcggcagcctcctctgtaaa 28034970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 26719718 - 26719772
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  26719718 agagtcaaacgacacgcgtccatgggatccttggtcaaaatttagggtatgacag 26719772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 26733807 - 26733861
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||    
T  26733807 agagtcaaacgacacgcgtccatgggatccttggtcaaaatttagggtatgacag 26733861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 29499570 - 29499478
Alignment:
Q  57 gtgtttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcat 149  Q
    ||||||||||||| || || || ||  ||||||||||||| ||| |||| || | |||||||||||||||||||||||||||| |||| ||||    
T  29499570 gtgtttgaatcatggttatgaagtttttgacatgtgtagacactccagccttagttttaagtaaaatcacccaaagaaatctgttatggtcat 29499478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 20483871 - 20483914
Alignment:
Q  86 acatgtgtagaaacttcagctttggatttaagtaaaatcaccca 129  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||    
T  20483871 acatgtgaagaaacttcagctttggttttaagtaaaatgaccca 20483914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 193 - 372
Target Start/End: Original strand, 17686 - 17865
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||| |||||| | | ||| ||||||| ||||||| |||| ||||||| ||| || ||||||||||||| | || |||||||||||||    
T  17686 gccttaatgcaggccagcctaactttaactcgctcgtctagctcctcttgtgtgtcaggcacaagcatctgattacacctattgaaaagctcctcgtagc 17785  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
     |||||| ||  ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  17786 gcctcttaagcataccaaaactgatgtgagcagcaccatgtcttgtcagctccttagcggcagcctccgctgtaaaaagt 17865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 193 - 372
Target Start/End: Complemental strand, 2742496 - 2742317
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  ||||||||||||| | ||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||| |||||||||||||||| |    
T  2742496 gccttaatgcaggccaacctaacttcagctcgctcgtcttgctcctcatgtgtgtcagtcacaagcagctggttacacctattcaagagctcctcgtacc 2742397  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
     |||||| |||  |||||||||||  ||||||||||| | |||||||| ||||||||||||||| ||| |||||||||||    
T  2742396 gcctcttcagtacaccaaaactgacgtgagcagcaccctatcttgtcatctccttagcggcagcctcctctgtaaaaagt 2742317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 203 - 368
Target Start/End: Complemental strand, 13273645 - 13273480
Alignment:
Q  203 aggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgag 302  Q
    |||||| |||||| | ||||| |||||||||||||||||||| ||||| | ||| || ||| ||||||||| ||||||||| || ||||| |||||| ||    
T  13273645 aggccagcctaacttcagctcgctcgtcttgctcctcatgtgtgtcagtcacaagcagctggttacacctattcaagagcttcttgtagcgcctcttcag 13273546  T
Q  303 tgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
    | ||||||||||||  |||||| |||| |||||||||| ||||||||||| ||| ||| |||||||    
T  13273545 tataccaaaactgacgtgagcatcaccctgtcttgtcatctccttagcggaagcctcctctgtaaa 13273480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 660
Target Start/End: Original strand, 9620060 - 9620187
Alignment:
Q  533 aacttataaattgttgattcgacttactgaagttaggttacacatgtgcttgaaattgcttgcatcttagtttaacttggctcttgataccatttattgg 632  Q
    ||||| ||||||||||||| ||||| |||||||| |||||| | ||  |||||||||||   ||| |||||| |||  |||||||||||||||||| |||    
T  9620060 aacttgtaaattgttgattagacttgctgaagtttggttactcgtgcacttgaaattgcagccattttagttcaaccaggctcttgataccatttactgg 9620159  T
Q  633 taattaaaacagccttctacataaatat 660  Q
     |||||| ||| ||||||| ||||||||    
T  9620160 caattaatacaaccttctagataaatat 9620187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 519 - 662
Target Start/End: Original strand, 9624450 - 9624595
Alignment:
Q  519 acatagttccgttaaacttataaattgttgattcgacttactgaagttaggttacac--atgtgcttgaaattgcttgcatcttagtttaacttggctct 616  Q
    |||||||||| |  ||||| ||||| ||||||| ||||| |||||||| |||||| |  ||||||||||||||||   |||||||||| |||  ||||||    
T  9624450 acatagttccatcgaacttgtaaatagttgattagacttgctgaagttgggttactctcatgtgcttgaaattgcagccatcttagttcaacccggctct 9624549  T
Q  617 tgataccatttattggtaattaaaacagccttctacataaatatgg 662  Q
    ||||||||||| || | |||||||| | ||||| | ||||||||||    
T  9624550 tgataccatttgttagcaattaaaataaccttcaagataaatatgg 9624595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 640
Target Start/End: Original strand, 17389982 - 17390063
Alignment:
Q  559 ctgaagttaggttacacatgtgcttgaaattgcttgcatcttagtttaacttggctcttgataccatttattggtaattaaa 640  Q
    ||||| || |||||| | |||||||||| |||||  |||||||||| ||| ||||||||||||||||||  ||| |||||||    
T  17389982 ctgaatttgggttactcgtgtgcttgaatttgctgccatcttagttcaacatggctcttgataccatttggtggcaattaaa 17390063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 16991036 - 16991079
Alignment:
Q  86 acatgtgtagaaacttcagctttggatttaagtaaaatcaccca 129  Q
    ||||||| ||||||||||||||||| |||||||||||| |||||    
T  16991036 acatgtgaagaaacttcagctttggttttaagtaaaatgaccca 16991079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 8e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 193 - 366
Target Start/End: Original strand, 37228442 - 37228615
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||| |||||| | ||||| ||||||||||||||| |||| ||||| | ||| || ||| ||||||||| ||||||||||||||||||    
T  37228442 gccttaatgcaggccagcctaacttcagctcgctcgtcttgctcctcctgtgtgtcagtcacaagcagctggttacacctattcaagagctcctcgtagc 37228541  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgta 366  Q
    || |||| |||  |||||||||||  |||||| |||| | |||||||| ||||||||| ||||| ||| |||||    
T  37228542 acttcttcagtacaccaaaactgacgtgagcaacaccctatcttgtcatctccttagcagcagcctcctctgta 37228615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 14096506 - 14096332
Alignment:
Q  194 ccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagca 293  Q
    |||||||  |||||| ||| || | ||||| ||||||| ||||||| |||| ||||||| ||| || ||| ||||||||| |||||| |||||||||||     
T  14096506 ccttaatgcaggccagcctcacttcagctcgctcgtctagctcctcttgtgtgtcaggcacaagcagctggttacacctattcaagaactcctcgtagcg 14096407  T
Q  294 cctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
    |||||| |||| ||||||||| || |||| || ||| |||||||||| ||||||||||||| | ||| |||||||    
T  14096406 cctctttagtgcaccaaaactaatgtgaggagtaccctgtcttgtcagctccttagcggcatcctcctctgtaaa 14096332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 16759377 - 16759323
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  16759377 agagtcaaacaacgcgtgtccgtgggatccttggtcaaaatttagggtatgacag 16759323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 16773261 - 16773207
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  16773261 agagtcaaacaacgcgtgtccgtgggatccttggtcaaaatttagggtatgacag 16773207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 17527106 - 17527054
Alignment:
Q  4 gagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||| ||||||||||| |||||||||||||||||||||| ||||||||    
T  17527106 gagtcaaacaacgcacgtccgagggatccttggtcaaaatttagtgtatgaca 17527054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 194 - 372
Target Start/End: Complemental strand, 35013870 - 35013692
Alignment:
Q  194 ccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagca 293  Q
    |||||||  |||||| ||||||  |||||  ||| ||||||||||| | || ||| ||| ||| || ||| ||||||||| |||||| ||||||||| |     
T  35013870 ccttaatgcaggccagcctaactcgagcttgctcctcttgctcctcctctgtgtctggcacaagcagctggttacacctattcaagatctcctcgtaccg 35013771  T
Q  294 cctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    | |||| | || |||||||||||| |||| |||||| |||||||||| ||||||| ||||||| |||||||||||||||    
T  35013770 cgtcttcaatgcaccaaaactgatgtgagaagcaccctgtcttgtcagctccttaccggcagcctccgctgtaaaaagt 35013692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14473768 - 14473713
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14473768 tcagagtcaaacgacgcacgtctgtgggatccttggtcaaaatttagggtatgaca 14473713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 19828559 - 19828614
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacagt 58  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  19828559 agagtcaaacgacgcgcgtccgtgggatccttggtcaaaatttagggtgtgacagt 19828614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 20532659 - 20532713
Alignment:
Q  2 cagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20532659 cagagtcaaacgatgcacgtccgtgggatctttggtcaaaatttagggtatgaca 20532713  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 27549693 - 27549639
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  27549693 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgacag 27549639  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 27535482 - 27535429
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  27535482 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgaca 27535429  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 25690826 - 25690774
Alignment:
Q  4 gagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||||| |||||||||| | | ||||||||||||||||||||||    
T  25690826 gagtcaaacgacgcatgtccgtgggaccttaggtcaaaatttagggtatgaca 25690774  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 25697619 - 25697567
Alignment:
Q  4 gagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||||| |||||||||| | | ||||||||||||||||||||||    
T  25697619 gagtcaaacgacgcatgtccgtgggaccttaggtcaaaatttagggtatgaca 25697567  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 6286541 - 6286618
Alignment:
Q  296 tcttgagtgtaccaaaactgatatgagcag-caccatgtcttgtcacctccttagcggcagcttccgctgtaaaaagt 372  Q
    |||| |||| |||||||||||| ||||||| |||| |||||||||| ||||||| | ||||| ||| |||||||||||    
T  6286541 tcttcagtgcaccaaaactgatgtgagcaggcaccttgtcttgtcagctccttaccagcagcctccactgtaaaaagt 6286618  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 20699447 - 20699508
Alignment:
Q  95 gaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatctacaat 156  Q
    |||||||||||||||||||| ||||| || | ||| ||||| || |||||||||||||||||    
T  20699447 gaaacttcagctttggatttcagtaagatgatccatagaaacctactatgatcatctacaat 20699508  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 28939230 - 28939285
Alignment:
Q  95 gaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatc 150  Q
    |||||||||||||||||||||||||| || | ||| ||||| || |||||||||||    
T  28939230 gaaacttcagctttggatttaagtaagatgatccatagaaacctactatgatcatc 28939285  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 14814926 - 14814836
Alignment:
Q  62 tgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    ||||||||||| || |||||  | ||||||| ||| ||||||||||||| |||||| | ||| ||||| ||||||||| | || |||||||    
T  14814926 tgaatcatagtaataaaattcttaacatgtgaagacacttcagctttggttttaagaagaatgacccagagaaatctggtgtggtcatcta 14814836  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 25711806 - 25711753
Alignment:
Q  4 gagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    |||||||||||||||  ||||||||| | | | |||||||||||||||||||||    
T  25711806 gagtcaaacgacgcatatccgtgggaccttagttcaaaatttagggtatgacag 25711753  T

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Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 232 - 369
Target Start/End: Complemental strand, 12626886 - 12626749
Alignment:
Q  232 tgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccat 331  Q
    |||||||| | || ||||||||||| || |||||||||||||  ||||||||||||||||| |||||| ||| |||||||||||| || |||| |||| |    
T  12626886 tgctcctcctctgtgtcaggctcaatcagctgattacacctatgcaagagctcctcgtagcgcctcttaagtttaccaaaactgacataagcaccacctt 12626787  T
Q  332 gtcttgtcacctccttagcggcagcttccgctgtaaaa 369  Q
    |||||  |||||||||||  ||| | ||||||||||||    
T  12626786 gtcttcccacctccttagaagcaacctccgctgtaaaa 12626749  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 262 - 372
Target Start/End: Original strand, 21063197 - 21063307
Alignment:
Q  262 tgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccg 361  Q
    |||||||||||| |||||||||||| |||||||||||| ||| |||||||||||| ||||||| |||  ||||||  |||||||||| | ||||| ||||    
T  21063197 tgattacacctattcaagagctccttgtagcacctcttcagtttaccaaaactgacatgagcaacacattgtcttcccacctccttaacagcagcctccg 21063296  T
Q  362 ctgtaaaaagt 372  Q
    || ||||||||    
T  21063297 ctataaaaagt 21063307  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 1888902 - 1888956
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  1888902 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgacag 1888956  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 1903003 - 1903056
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  1903003 agagtcaaacgacacgcgtccgtgggatccttggtcaaaatttagggtatgaca 1903056  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 4662826 - 4662878
Alignment:
Q  2 cagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatga 54  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  4662826 cagagtcaaacgacgcgcgtccgtggaatccttggtcaaaatttagggtatga 4662878  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 24188100 - 24188153
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  24188100 agagtcaaacgacacgcgtccatgggatccttggtcaaaatttagggtatgaca 24188153  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 193 - 352
Target Start/End: Complemental strand, 38456987 - 38456829
Alignment:
Q  193 gccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagc 292  Q
    ||||||||  |||||| |||||| | ||||| |||||||| |||||| | || ||||| | ||| ||  || ||||||||| ||||||||||||||||||    
T  38456987 gccttaatgcaggccagcctaacttcagctcgctcgtcttactcctcctatgtgtcagtcacaagcagttggttacacctattcaagagctcctcgtagc 38456888  T
Q  293 acctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcgg 352  Q
      ||||| |||  |  ||||||||  ||||||||||| | |||||||| ||| |||||||    
T  38456887 -gctcttcagtacaaaaaaactgacgtgagcagcaccctatcttgtcatctctttagcgg 38456829  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 12662005 - 12661954
Alignment:
Q  6 gtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||| | ||||||||||| |||  |||||||||||||||||||||||||    
T  12662005 gtcaaacaatgcacgtccgtgagatttttggtcaaaatttagggtatgacag 12661954  T

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Target: scaffold0408 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 194 - 368
Target Start/End: Complemental strand, 6847 - 6674
Alignment:
Q  194 ccttaatataggccaacctaacatgagctcactcgtcttgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagca 293  Q
    |||||||  |||||| ||| || | ||||| ||||||| ||||||| |||| ||||||| ||| || ||| ||||||||| |||||| |||||||||||     
T  6847 ccttaatgcaggccagcctcacttcagctcgctcgtctagctcctcttgtgtgtcaggcacaagcagctggttacacctattcaagaactcctcgtagcg 6748  T
Q  294 cctcttgagtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagcttccgctgtaaa 368  Q
    |||||| |||| ||| ||||| || |||| || ||| |||||||||| ||||||||||||| | ||| |||||||    
T  6747 cctctttagtgcacc-aaactaatgtgaggagtaccctgtcttgtcagctccttagcggcatcctcctctgtaaa 6674  T

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Target: scaffold1312 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 1631 - 1576
Alignment:
Q  1 tcagagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 56  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1631 tcagagttaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgaca 1576  T

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Target: scaffold0018 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 181074 - 181191
Alignment:
Q  232 tgctcctcatgtgcgtcaggctcaaacaactgattacacctactcaagagctcctcgtagcacctcttgagtgtaccaaaactgatatgagcagcaccat 331  Q
    |||||||| | || ||||||||||| || |||||||||||||   || ||||||||||||| |||||| ||| |||||||||||| |||||||||||| |    
T  181074 tgctcctcctttgtgtcaggctcaatcagctgattacacctatgaaatagctcctcgtagcgcctcttcagtttaccaaaactgacatgagcagcacctt 181173  T
Q  332 gtcttgtcacctccttag 349  Q
     ||||  |||||||||||    
T  181174 atcttcccacctccttag 181191  T

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Target: scaffold0545 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0545
Description:

Target: scaffold0545; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 10004 - 10058
Alignment:
Q  3 agagtcaaacgacgcacgtccgtgggatccttggtcaaaatttagggtatgacag 57  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10004 agagtcaaacgacgcgcgtccgtgggatccttggtcaaattttagggtatgacag 10058  T

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Target: scaffold0088 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 52502 - 52410
Alignment:
Q  60 tttgaatcatagtgattaaattgatgacatgtgtagaaacttcagctttggatttaagtaaaatcacccaaagaaatctgctatgatcatcta 152  Q
    |||| ||||| ||||| |||||  | |||||||| ||||||| |||||| ||||||||||| || ||||||||||| |||||||| |||||||    
T  52502 tttgtatcatggtgatgaaattttttacatgtgtcgaaactttagcttttgatttaagtaagataacccaaagaaacctgctatggtcatcta 52410  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 32994 - 33049
Alignment:
Q  301 agtgtaccaaaactgatatgagcagcaccatgtcttgtcacctccttagcggcagc 356  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||||||||| |||||    
T  32994 agtgcaccgaaactgatatgagcagcaccctgtcttgtcagctccttagcagcagc 33049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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