View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8220_low_10 (Length: 220)
Name: NF8220_low_10
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 36515018 - 36515206
Alignment:
| Q |
13 |
gaagcagagatacggacacaaacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctatt |
112 |
Q |
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| T |
36515018 |
gaagcacagatacggacacagacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctatt |
36515117 |
T |
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| Q |
113 |
ccaataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaaga |
201 |
Q |
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| T |
36515118 |
ccaataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaaga |
36515206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 36806208 - 36806020
Alignment:
| Q |
13 |
gaagcagagatacggacacaaacactggacacaaaaatggtcaaggaagtacccaatcatgacaagaaagcatgaaatggtcagctccataacttctatt |
112 |
Q |
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| T |
36806208 |
gaagcacagatacggacacagacaccagacacagaaatggtcaagaaagtacccaatcatgacaagaaagcatgaaatgatcagctccataacttctatt |
36806109 |
T |
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| Q |
113 |
ccaataagcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaaga |
201 |
Q |
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| T |
36806108 |
ccaatatgcatatttgtgtgatatgatatgaacataatcaccaatagttcttcccaaaacagctttgtcacgaataactgggtgaaaga |
36806020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 41756757 - 41756718
Alignment:
| Q |
62 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
101 |
Q |
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| T |
41756757 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
41756718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 41764699 - 41764634
Alignment:
| Q |
62 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatattt |
127 |
Q |
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|||||||||||| |||| ||| |||||||| |||||||||| ||||| |||||||| | |||||| |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatattt |
41764634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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