View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8220_low_2 (Length: 576)
Name: NF8220_low_2
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 265 - 559
Target Start/End: Original strand, 8473107 - 8473401
Alignment:
| Q |
265 |
agtctctctttaaacaagttccttattgtcagttcaaattcaaaaaatttactttttatataagttaaacaagtttaattctcgcattgaatagataaaa |
364 |
Q |
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| T |
8473107 |
agtctctctttaaacaagttccttattttcggttcaaattcaaaaaaattactttttatataagttaaacaagtttaattctcgcattgaatagataaaa |
8473206 |
T |
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| Q |
365 |
atgttcaatgtaaaacttaagtcataagattctcccactagaaggagtaattttttgtttaacatttatggacttaagtcctaacaattgatgtattctt |
464 |
Q |
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| T |
8473207 |
atgttcaatataaaacttaagtcataagattctcccattagaaggagtaattttttgtttaacatttatggacttaagtcctaacaattgatgtattctt |
8473306 |
T |
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| Q |
465 |
gagagttagaacnnnnnnntaaagacatatagattaaattatgtacttaaccgaataccgacgggtaggtgaagttatctagagatactattatc |
559 |
Q |
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| T |
8473307 |
gagagttagaacaaaaatataaagacatatagattaaattatgtacttaaccgaatactgacgggtaggtgaaaccatctaaagatactattatc |
8473401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 8472858 - 8473042
Alignment:
| Q |
17 |
tactattagattaaagtataagaagaattgttccttgcgtcatcacaccctcaggctttagtcacctactaattacgcatgaaataaccaagagaatgag |
116 |
Q |
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| T |
8472858 |
tactattagattaaagtataagaagaattgttccttgcgtcatcacaccctcaggctttagtcacctactaattacgcatgaaataaccaagagaatgaa |
8472957 |
T |
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| Q |
117 |
tctaaattcaactgatctacaaaatgttccttaactataccaaatctcttatgtagcatctgaatttgctaagccaatagggtaa |
201 |
Q |
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| T |
8472958 |
tctaaattcaactgatctacaaaatgttccttaactataccaaatctcttatgtagcatctgaatttgctaagccaatagggtaa |
8473042 |
T |
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