View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8220_low_5 (Length: 410)
Name: NF8220_low_5
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 22686159 - 22685778
Alignment:
| Q |
1 |
atttgaagactgagctggataattgaatattcaagttgttcaaagaaaagacccacaaaataaaacatgatgctgtaggaactattggtatatttggata |
100 |
Q |
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| T |
22686159 |
atttgaagactgaactggataattgaatattcaagttgttcaaagaaaagacccacaaaataaaacatgatgctgttggaactattggtatatttggaca |
22686060 |
T |
|
| Q |
101 |
cccattcataaactcaaaatcatgtacactttgttccgaatgagctgggaaacaacattcaaatatgtcttatcacatgtctgagacagaaatgtaaagc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
22686059 |
cccattcataaactcaaaatcatgtaccctttgttccaaatgagctgggaaacaacattcaaatttgtcttatcacatgcctgagacagaaatgtaaagc |
22685960 |
T |
|
| Q |
201 |
aactcacactatggcatcttctccaaacatgttgccagaggtttttaagttcgttcctccgaataggtttgaccaaaaaatcagctgcgccttttgacaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22685959 |
aactcacactatggcatcttctccaaacatgttgccagaggtttttaagttcgttcctccgaataggtttgactaaaaaatcagctgcgccttttgacaa |
22685860 |
T |
|
| Q |
301 |
acacttaaacactatacccatagaatcatgacatgacatcactgcatacatttcaatatgttcagtataccaaaacaccaaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22685859 |
acacttaaacactatacccatagaatcatgacatgacatcactgcatacatttcaatatgttcagtacaccaaaacaccaaa |
22685778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 346
Target Start/End: Complemental strand, 28873920 - 28873780
Alignment:
| Q |
206 |
acactatggcatcttctccaaacatgttgccagaggtttttaagttcgttcctccgaataggtttgaccaaaaaatcagctgcgccttttgacaaacact |
305 |
Q |
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|||||||| ||||| ||||| ||||| ||||| ||||||||||| || ||| | || || ||||| || | ||| || | || || ||||||||||||| |
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| T |
28873920 |
acactatgacatctcctccagacatgctgccacaggtttttaagctcattcttgcgtatgggttttactagaaagtcgacagccccctttgacaaacact |
28873821 |
T |
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| Q |
306 |
taaacactatacccatagaatcatgacatgacatcactgca |
346 |
Q |
| |
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|||| |||| ||||||||| |||||| |||||||||||||| |
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| T |
28873820 |
taaagactaaacccatagagtcatgagatgacatcactgca |
28873780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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