View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8220_low_8 (Length: 323)
Name: NF8220_low_8
Description: NF8220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8220_low_8 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 13062 - 12740
Alignment:
| Q |
1 |
accaggaggaaatctcaccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagcc |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13062 |
accagtaggaaatctcaccatatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggacgctacccttttcgaaagcc |
12963 |
T |
|
| Q |
101 |
agtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12962 |
agtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgt |
12863 |
T |
|
| Q |
201 |
gtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12862 |
gtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaactt |
12763 |
T |
|
| Q |
301 |
gggaagtatatactgcttggtat |
323 |
Q |
| |
|
|||||| |||||||||||||||| |
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| T |
12762 |
gggaagcatatactgcttggtat |
12740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33976084 - 33975812
Alignment:
| Q |
16 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
115 |
Q |
| |
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||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
33976084 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33975985 |
T |
|
| Q |
116 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
215 |
Q |
| |
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||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |||||| |||||||| | || | |
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| T |
33975984 |
atgtacagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33975885 |
T |
|
| Q |
216 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
288 |
Q |
| |
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|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33975884 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttt |
33975812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33953483 - 33953211
Alignment:
| Q |
16 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
115 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
33953483 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33953384 |
T |
|
| Q |
116 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
215 |
Q |
| |
|
||||| || ||||||||| ||||| ||||||||||||||||||||||||| |||| ||||| | ||| |||| || |||||| |||||||| | || | |
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| T |
33953383 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaaggaacgtaaatccgctctaatctgattctttccaggttctgtaaagaaccgagaa |
33953284 |
T |
|
| Q |
216 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
288 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
33953283 |
gctcaatgttgttcagtttagaaggatggaaatcgtagtttgtgattatcagaactcttagtttactcatttt |
33953211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33960789 - 33960517
Alignment:
| Q |
16 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
115 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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|
| T |
33960789 |
caccaaatctttgcagtaatcaatgttcaattcttctaggtttgcaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33960690 |
T |
|
| Q |
116 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
215 |
Q |
| |
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||||| || ||||||||| ||| | |||||||||||||||||||||| || ||||||||||| ||||| |||| || |||||| |||||||| | || | |
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| T |
33960689 |
atgtagagagatagttttttcaaattcttcaatgtgccgaaggaagggaccgaaattcgctctagtctgattctttccaggttctgtaaagaaccgagaa |
33960590 |
T |
|
| Q |
216 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
288 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33960589 |
gctcaatgttgttcagtttagaaggatggaaaccgtagtttgtgattatcagaactcttagtttactcatttt |
33960517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33993003 - 33992731
Alignment:
| Q |
16 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacac |
115 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
33993003 |
caccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgctacccttttcaaaagccagtattgtgttacac |
33992904 |
T |
|
| Q |
116 |
atgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagta |
215 |
Q |
| |
|
||||| || ||||||||| ||||| |||||||||||||||||||||| || |||||||||| ||||| ||| || |||||| |||||||| | || | |
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|
| T |
33992903 |
atgtagagagatagttttttcagattcttcaatgtgccgaaggaagggaccaaaattcgctctagtctgattttttccaggttctgtaaagaaccgagaa |
33992804 |
T |
|
| Q |
216 |
gctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
288 |
Q |
| |
|
|||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
33992803 |
gctcaaagttgttcagttcacatggatggaaactgtagtttgtgattataagaacttttagtttactcatttt |
33992731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 297
Target Start/End: Complemental strand, 33914289 - 33914024
Alignment:
| Q |
32 |
taatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagtt |
131 |
Q |
| |
|
||||||||| |||| ||||||| || ||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||| || |||| || |
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|
| T |
33914289 |
taatcaatgctcaaatcttctaaattaggaaacaaatctgaaattaggatgctacccttttcaaaagctagtcttgtattacacatgtagagggataatt |
33914190 |
T |
|
| Q |
132 |
ttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcag |
231 |
Q |
| |
|
|| | ||| |||||| |||||| ||||||||||||||||| ||||| || || |||| |||||||||| ||||||| || ||||||||| || ||||| |
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|
| T |
33914189 |
ttttgagattcttcattgtgccaaaggaaggaacagaaatccgctctagcctgattcttttcaggttggataaagagctaattagctcaaaattgttcag |
33914090 |
T |
|
| Q |
232 |
ttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaa |
297 |
Q |
| |
|
| ||||||| | ||||| | ||| ||| ||| ||| || ||||||| |||||||||||| |||| |
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|
| T |
33914089 |
tacagaagggcgtaaaccatgatttatgactataagagctcttagtttgctcattttctccttcaa |
33914024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 26 - 297
Target Start/End: Complemental strand, 33943012 - 33942741
Alignment:
| Q |
26 |
ttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattaggacgctacccttttcgaaagccagtcttgtattacacatgtaaagtg |
125 |
Q |
| |
|
||||| ||||| ||| |||| ||||||| || |||||| || |||||||||| ||| |||||||| ||||| |||||||||||||||||||| || | |
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|
| T |
33943012 |
ttgcaataatccatgctcaaatcttctaaattaggaaataagtcggaaattaggatgctgcccttttcaaaagcgagtcttgtattacacatgtagaggg |
33942913 |
T |
|
| Q |
126 |
atagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagtt |
225 |
Q |
| |
|
||| |||| | ||| ||||||||||||| ||||||||||||||||| | ||| || || |||| ||| |||||| ||||||| ||||||||||| || |
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|
| T |
33942912 |
ataattttttaagattcttcaatgtgccaaaggaaggaacagaaatcctctctagcctgattcttttaaggttggataaagagctaagtagctcaagatt |
33942813 |
T |
|
| Q |
226 |
attcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaa |
297 |
Q |
| |
|
|||||||||||||| | ||||| | ||| ||| ||| ||| |||| ||||| |||||||||||||||| |
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|
| T |
33942812 |
gttcagttcagaagggcgtaaaccatgatttatgactataagagctttaagtttgttcattttctccatcaa |
33942741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 82 - 288
Target Start/End: Original strand, 8277342 - 8277541
Alignment:
| Q |
82 |
gctacccttttcgaaagccagtcttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagt |
181 |
Q |
| |
|
||||||| |||| |||| || |||||||||||||||||| | |||| |||||||||| ||||||||||| ||| ||| ||||| ||||| ||||| | | |
|
|
| T |
8277342 |
gctacccatttcaaaagtcattcttgtattacacatgtagacagataattttctcagattcttcaatgtgtcgagggatggaacggaaatccgctctaat |
8277441 |
T |
|
| Q |
182 |
ctaattcgtttcaggttgtgtaaagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttac |
281 |
Q |
| |
|
|| | || ||| ||||| |||| ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8277442 |
ctgactctttttaggttctgtagaga-------agctcaatgttattcagtttagaaggatggaaactgtagtttgtgattatcagaacttttagtttac |
8277534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 8275944 - 8276008
Alignment:
| Q |
16 |
caccatatatttgcagtaatcaatgttcaattcttctagatatggaaatgcatctgaaattagga |
80 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
8275944 |
caccaaatctttgcaggaatcaatgttcaattcttcaggatttggaaatgcatctgaaattagga |
8276008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 27910976 - 27911046
Alignment:
| Q |
229 |
cagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcattttctccatcaact |
299 |
Q |
| |
|
||||||||||||||| ||||| || ||| | ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
27910976 |
cagttcagaaggatgcaaaccataatttcttattatgagaacttttagtttgctcattttctccatcaact |
27911046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 288
Target Start/End: Original strand, 6742793 - 6742977
Alignment:
| Q |
104 |
cttgtattacacatgtaaagtgatagttttctcagactcttcaatgtgccgaaggaaggaacagaaattcgctccagtctaattcgtttcaggttgtgta |
203 |
Q |
| |
|
|||||||| ||||| | ||| | |||||||| |||| |||||||| ||| ||| |||| || |||| ||||| ||| ||| ||||||||| || |
|
|
| T |
6742793 |
cttgtattgcacatatgaagggttagttttcgcagattcttcaatttgcacaagcaagggactgaaaccttctccaatcttattattttcaggtttgata |
6742892 |
T |
|
| Q |
204 |
aagagtcaagtagctcaaagttattcagttcagaaggatggaaaccgtagtttgtgattatcagaacttttagtttactcatttt |
288 |
Q |
| |
|
|||| ||||||||||||| || | | ||||||| |||||||||| || ||||||| ||| | |||||| ||||| |||||||| |
|
|
| T |
6742893 |
aagaaccaagtagctcaaacttggtgaattcagaacgatggaaaccataatttgtgactattaaaactttcagtttgctcatttt |
6742977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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