View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_high_3 (Length: 644)
Name: NF8221_high_3
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 177 - 634
Target Start/End: Complemental strand, 42039860 - 42039403
Alignment:
| Q |
177 |
cccccaacaagtgctccacataaatcattatgagaaaacaaaatatggagnnnnnnnnntaacacaacaacatgaagacttttatctcaacacagaataa |
276 |
Q |
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| T |
42039860 |
cccccaaaaagtgctccacataaatcattatgagaaaacaaaatatggagaaaaaaaaataacacaactacatgaagacttttatctcaacacagaataa |
42039761 |
T |
|
| Q |
277 |
caataatttgttgcaacccagaaagtacatagataacaattatttatacttaggatacattaataatagaacgcgtgaaatgatgaaaaagacttggaaa |
376 |
Q |
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| T |
42039760 |
caataatttgttgcaacccagaacgtacatagataacaattatttatacttaggatacattaataatagaacgcgtgaaatgatgaaacagacttggaaa |
42039661 |
T |
|
| Q |
377 |
taacatgatgcctcatgactcaaaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagctgtgattggca |
476 |
Q |
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| T |
42039660 |
taacatgatgcctcatgactcaaaaaatatccacctcaataaagaataacctaggacggtttttgaggtgaaactcttcaacaggaagctgtgattggca |
42039561 |
T |
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| Q |
477 |
ctggttctactaaagccttcgtgccgccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaaagctctcaaagcaatcctccaa |
576 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42039560 |
ctggttctactaaagccttcgtgccaccggtaactccattttctcctttatgaatcttgtcggccgccatggcaacaaagctctcaaagcaatcctccaa |
42039461 |
T |
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| Q |
577 |
gctcctgaatgattcaccaggatatagagtgcttatctcaacatcatgatgtccatct |
634 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42039460 |
gctcctgaatgattcaccaggatatagagtgcttatctcaacatcatgaattccatct |
42039403 |
T |
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