View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_high_5 (Length: 449)
Name: NF8221_high_5
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 15682717 - 15682518
Alignment:
| Q |
7 |
agagcataatgatgaattggggtcacaaacattaataaagtcttcactctcattaatacacaaaccttaatattcttacgaagaattacatttattatct |
106 |
Q |
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| T |
15682717 |
agagcataatgatgaattggggtcacaaacattaataaagtcttcactctcattaatacacaaaccttaatattcttacgaagaattacatttattatct |
15682618 |
T |
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| Q |
107 |
tacatagatatggaaatccagatctatatcatacacataagtaacaagtcttcaaatcaaatttacatccaagataagccacaaagtaagtagttctcac |
206 |
Q |
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| T |
15682617 |
tacatagatatggaaatccagatctatatcatacacataagtaacaagtcttcaaatcaaatttacatccaagataagccacaaagtaagtagttctcac |
15682518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 300 - 432
Target Start/End: Complemental strand, 15682427 - 15682297
Alignment:
| Q |
300 |
gttccacactttatatatgtaacacaaattaaaacttcnnnnnnnnnnnnncaataattagaaatatatatataaagagaagtgcaaccataatagactt |
399 |
Q |
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| T |
15682427 |
gttccacactttatatatgtaacacaaattaaaacttcaaaaaaaataaa--aataattagaaatatatatataaagagaggtgcaaccataatagactt |
15682330 |
T |
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| Q |
400 |
gcttgatctagcaaacaatcggaccataaagct |
432 |
Q |
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| T |
15682329 |
gcttgatctagcaaacaatcggaccataaagct |
15682297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 86 - 195
Target Start/End: Original strand, 15592282 - 15592390
Alignment:
| Q |
86 |
gaagaattacatttattatcttacatagatatggaaatccagatctatat-catacacataagtaacaagtcttcaaatcaaatttacatccaagataag |
184 |
Q |
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| T |
15592282 |
gaagaattacatttattatcttacatagatatggaaatccagatctatatactttcac--aactcacaagtcttcaaatcaaatttacaaacaaaagaag |
15592379 |
T |
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| Q |
185 |
ccacaaagtaa |
195 |
Q |
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| T |
15592380 |
acacaaagtaa |
15592390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 15592555 - 15592624
Alignment:
| Q |
363 |
atatatatataaagagaagtgcaaccataatagacttgcttgatctagcaaacaatcggaccataaagct |
432 |
Q |
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| T |
15592555 |
atatatatgtagagagagttgtaacgataatagacttgcttgatctagcaaataatcggaccattaagct |
15592624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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