View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_high_9 (Length: 321)
Name: NF8221_high_9
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 34827550 - 34827246
Alignment:
| Q |
1 |
gaagttggtatcgtcatttacaattgccaacacttacagacgaataattgnnnnnnnnnnnnnn--gacaaagacgaataattgttaattaacaattatt |
98 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
34827550 |
gaagttggaatcgtcatttacaattgccaacacttacagacgaataattgttttttttttttttttgacaaagacgaataattgttaattaacgattatt |
34827451 |
T |
|
| Q |
99 |
tactgtctccccttcnnnnnnnnnnnnngattatttactcttaaactttttattttattgaaataattctctttgaagttggaatggtcatggacatatg |
198 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34827450 |
tactctctccccttcaaaaaaaaaaa--gattatttactcttaaactttttattttattgaaataattctctttgaagttggaatggtcatggacatatg |
34827353 |
T |
|
| Q |
199 |
gaaattatgaaaggttactttagtaaatataaatagtatgaacattagaagcttttaatggaacatttaatttaaagacgatgcaaatgttgaagagaga |
298 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34827352 |
gaaattatgaaagggtactttagtaaatataaatagtatgaacattagaagcttttaatggaacatttaatttaaagacgatgcaaatgttgaagagaga |
34827253 |
T |
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| Q |
299 |
gcaatgt |
305 |
Q |
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||||||| |
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| T |
34827252 |
gcaatgt |
34827246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 34827595 - 34827534
Alignment:
| Q |
127 |
gattatttactcttaaactttttattttattgaaataattctctttgaagttggaatggtcat |
189 |
Q |
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||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
34827595 |
gattatttactcttagacattttattttat-gaaataatactctttgaagttggaatcgtcat |
34827534 |
T |
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