View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8221_low_1 (Length: 1025)

Name: NF8221_low_1
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8221_low_1
NF8221_low_1
[»] chr3 (5 HSPs)
chr3 (638-963)||(38403227-38403550)
chr3 (502-570)||(25743847-25743916)
chr3 (376-423)||(32211925-32211972)
chr3 (502-563)||(2505393-2505455)
chr3 (502-563)||(48725315-48725377)
[»] chr1 (7 HSPs)
chr1 (502-563)||(37315348-37315409)
chr1 (502-563)||(3097703-3097765)
chr1 (502-563)||(9266808-9266870)
chr1 (502-563)||(15227783-15227845)
chr1 (502-563)||(17333362-17333424)
chr1 (649-719)||(42454874-42454944)
chr1 (502-563)||(35700731-35700792)
[»] chr8 (9 HSPs)
chr8 (639-719)||(8251300-8251382)
chr8 (636-719)||(2207832-2207916)
chr8 (502-563)||(13643056-13643118)
chr8 (502-563)||(13743481-13743543)
chr8 (505-547)||(30933405-30933447)
chr8 (502-563)||(34228726-34228788)
chr8 (502-563)||(42433624-42433685)
chr8 (509-569)||(4811596-4811657)
chr8 (510-563)||(17467647-17467700)
[»] chr7 (4 HSPs)
chr7 (636-715)||(41508161-41508242)
chr7 (502-589)||(7689280-7689367)
chr7 (501-538)||(13556481-13556518)
chr7 (510-563)||(34333328-34333381)
[»] chr4 (4 HSPs)
chr4 (505-570)||(19350767-19350833)
chr4 (502-574)||(3999465-3999538)
chr4 (502-574)||(20654708-20654781)
chr4 (376-427)||(42183319-42183370)
[»] chr6 (3 HSPs)
chr6 (502-574)||(2580986-2581058)
chr6 (649-709)||(7926881-7926941)
chr6 (636-719)||(34837152-34837237)
[»] chr5 (2 HSPs)
chr5 (502-563)||(4837301-4837363)
chr5 (668-709)||(6688884-6688925)
[»] chr2 (4 HSPs)
chr2 (502-563)||(20552975-20553037)
chr2 (502-563)||(15079039-15079100)
chr2 (505-570)||(30217647-30217712)
chr2 (502-563)||(39531868-39531929)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 638 - 963
Target Start/End: Original strand, 38403227 - 38403550
Alignment:
Q  638 cttatttaatgtgtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaatatttgcattgatgttaatggn 737  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||      
T  38403227 cttatttaatgtgtcttattaatcttatcgagtgtttttaatgctttacaattatttatgatggtatatttggaaaaatatttgcattgatgttaatgtt 38403326  T
Q  738 nnnnnnnnnnnncttataataaggattgtaggaaatatatttttataagttaaaggccaagttgagttaatttaagtaatttaaagccagattaaccctt 837  Q
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38403327 ttttttgtttttcttataataaggattgtaggaaatatatttttataagttaaaggccaagttgagttaatttatgtaatttaaagccagattaaccctt 38403426  T
Q  838 ctttcnnnnnnnnngtacaaaaccaattttaaagtgaagagatcaaattacaagataagcnnnnnnnnnnttgaatacaagatgagcaaattgatctatt 937  Q
     |||          ||||||||||||||||||||||||||||||||||||||||||||||          ||| ||||||||||||||||||||||||||    
T  38403427 tttt--ttttttttgtacaaaaccaattttaaagtgaagagatcaaattacaagataagcaaaaaaaaaattggatacaagatgagcaaattgatctatt 38403524  T
Q  938 ttaaaatttaaagatcacattgaact 963  Q
    ||||||||||||||||||||||||||    
T  38403525 ttaaaatttaaagatcacattgaact 38403550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 502 - 570
Target Start/End: Complemental strand, 25743916 - 25743847
Alignment:
Q  502 ttgactttttatgaattaattacataatttc-aatgcaataattacttattaatttccttttttagtatc 570  Q
    |||||||||||||||||||||||| |||||  |||||||||||||||   ||||||||||||||||||||    
T  25743916 ttgactttttatgaattaattacacaatttttaatgcaataattactatataatttccttttttagtatc 25743847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 32211972 - 32211925
Alignment:
Q  376 tatatataagaagattttcaaaaataatgttggtcatatttataagaa 423  Q
    |||||||||||| ||||||||||| | |||||||| ||||||||||||    
T  32211972 tatatataagaaaattttcaaaaaaattgttggtcttatttataagaa 32211925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 2505455 - 2505393
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||||||||||||||| |||||||||||| ||| ||||   |||||||||||||    
T  2505455 ttgactttattatgaattaattacacaatttcaatgcactaactactatataatttccttttt 2505393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 48725377 - 48725315
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  48725377 ttgactttattatcaattaattacacaatttcaatgcattaattactatataatttccttttt 48725315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 37315348 - 37315409
Alignment:
Q  502 ttgactttttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||||||| |||||||||||||||||||||||| ||| ||||   |||||||||||||    
T  37315348 ttgactttttataaattaattacataatttcaatgcattaactactatataatttccttttt 37315409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 3097765 - 3097703
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| |||||||||||||||||||||||| ||| ||||   |||||||||||||    
T  3097765 ttgactttattataaattaattacataatttcaatgcattaactactatataatttccttttt 3097703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 9266808 - 9266870
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||||||||||||||| |||||||||||| ||| ||||   |||||||||||||    
T  9266808 ttgactttattatgaattaattacacaatttcaatgcattaaatactatataatttccttttt 9266870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 15227845 - 15227783
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  15227845 ttgactttattatcaattaattacacaatttcaatgcattaattactatataatttccttttt 15227783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 17333362 - 17333424
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||||||||||||||| |||||||||||| ||| ||||   |||||||||||||    
T  17333362 ttgactttattatgaattaattacacaatttcaatgcattaactactatataatttccttttt 17333424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 649 - 719
Target Start/End: Complemental strand, 42454944 - 42454874
Alignment:
Q  649 tgtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaatatt 719  Q
    |||||||||||| |||  ||||||||||||||||| | |||| | ||||| |||||||||  |||||||||    
T  42454944 tgtctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatatt 42454874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 35700731 - 35700792
Alignment:
Q  502 ttgactttttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||||||| ||||||||||| |||||||||| | ||| ||||   |||||||||||||    
T  35700731 ttgactttttataaattaattacacaatttcaatgtattaactactgtataatttccttttt 35700792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 639 - 719
Target Start/End: Original strand, 8251300 - 8251382
Alignment:
Q  639 ttatttaatg--tgtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaatatt 719  Q
    ||||||||||  |||||||||||| |||  |||| |||||||||||| |||||| | ||||| |||||||||| |||||||||    
T  8251300 ttatttaatggttgtctttttaatattagtgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatatt 8251382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 636 - 719
Target Start/End: Original strand, 2207832 - 2207916
Alignment:
Q  636 cccttatttaatgt--gtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaatatt 719  Q
    ||||||||||||||  || |||||||| |||  | ||||||||||||||| |||||| | ||||| |||||||||| |||||||||    
T  2207832 cccttatttaatgtttgtatttttaatattaatgggtgtatttaatgcttcacaatt-tttatgagggtatatttgtaaaaatatt 2207916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 13643118 - 13643056
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| |||||||||||||||||||||||| ||| ||||   |||||||||||||    
T  13643118 ttgactttattataaattaattacataatttcaatgcattaactactatataatttccttttt 13643056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 13743543 - 13743481
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| |||||||||||||||||||||||| ||| ||||   |||||||||||||    
T  13743543 ttgactttattataaattaattacataatttcaatgcattaactactatataatttccttttt 13743481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 505 - 547
Target Start/End: Original strand, 30933405 - 30933447
Alignment:
Q  505 actttttatgaattaattacataatttcaatgcaataattact 547  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||    
T  30933405 actttttataaattaattacacaatttcaatgcattaattact 30933447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 34228788 - 34228726
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  34228788 ttgactttattatcaattaattacacaatttcaatgcattaattactatataatttccttttt 34228726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 42433624 - 42433685
Alignment:
Q  502 ttgactttttatgaattaattacataatttcaatgcaataattacttat-taatttccttttt 563  Q
    |||||||||||| ||||||||||| |||||||||||| ||| || |||| |||||||||||||    
T  42433624 ttgactttttataaattaattacacaatttcaatgcattaacta-ttatataatttccttttt 42433685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 509 - 569
Target Start/End: Complemental strand, 4811657 - 4811596
Alignment:
Q  509 tttatgaattaattacataattt-caatgcaataattacttattaatttccttttttagtat 569  Q
    ||||||||||||||| | ||||| ||||||||||||||||   |||||| ||||||||||||    
T  4811657 tttatgaattaattatacaattttcaatgcaataattactatataattttcttttttagtat 4811596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 17467700 - 17467647
Alignment:
Q  510 ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  17467700 ttatcaattaattacacaatttcaatgcattaattactgcataatttccttttt 17467647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 636 - 715
Target Start/End: Original strand, 41508161 - 41508242
Alignment:
Q  636 cccttatttaatgt--gtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaa 715  Q
    ||||||||||||||  ||||||||||| |||  | ||||||||||||||| |||||| | ||||| |||||||||| |||||    
T  41508161 cccttatttaatgtttgtctttttaatattagtgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaa 41508242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 589
Target Start/End: Original strand, 7689280 - 7689367
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttttagtatcattattcagtgtctcagag 589  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||    |||||||||||||| |||| ||| |||||||| |||||    
T  7689280 ttgactttattataaattaattacacaatttcaatgcattaattactgtaaaatttcctttttta-tatccttaatcagtgtcccagag 7689367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 13556518 - 13556481
Alignment:
Q  501 attgactttttatgaattaattacataatttcaatgca 538  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  13556518 attgactttttataaattaattacacaatttcaatgca 13556481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 34333381 - 34333328
Alignment:
Q  510 ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  34333381 ttataaattaattacacaatttcaatgcattaattactatataatttccttttt 34333328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 19350767 - 19350833
Alignment:
Q  505 actttttatgaattaattacataattt-caatgcaataattacttattaatttccttttttagtatc 570  Q
    |||||||||||||| |||||| ||||| |||| |||||||||||  |||||||||||||||| ||||    
T  19350767 actttttatgaattgattacacaattttcaattcaataattactatttaatttccttttttaatatc 19350833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Original strand, 3999465 - 3999538
Alignment:
Q  502 ttgactttttatgaattaattacataattt-caatgcaataattacttattaatttccttttttagtatcatta 574  Q
    ||||||||||||| ||| |||||| ||||| |||||||| || ||||   ||||||||||||||||||||||||    
T  3999465 ttgactttttatggatttattacacaattttcaatgcaacaactactatgtaatttccttttttagtatcatta 3999538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 20654781 - 20654708
Alignment:
Q  502 ttgactttttatgaattaattacataattt-caatgcaataattacttattaatttccttttttagtatcatta 574  Q
    ||||||||||||  |||||||||| ||||| ||||||||||  ||||   ||||||||||||||||||||||||    
T  20654781 ttgactttttattgattaattacacaattttcaatgcaatagctactctataatttccttttttagtatcatta 20654708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 42183319 - 42183370
Alignment:
Q  376 tatatataagaagattttcaaaaataatgttggtcatatttataagaagggt 427  Q
    |||||||||||| ||||| ||||| | |||||||| ||||||||||||||||    
T  42183319 tatatataagaaaattttgaaaaaaattgttggtcctatttataagaagggt 42183370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 2581058 - 2580986
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttttagtatcatta 574  Q
    |||||||| |||| |||||||||||||||||||||||| ||| ||||   ||||||||||||||| ||||||||    
T  2581058 ttgactttattataaattaattacataatttcaatgcattaactactatataatttcctttttta-tatcatta 2580986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 649 - 709
Target Start/End: Original strand, 7926881 - 7926941
Alignment:
Q  649 tgtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttg 709  Q
    |||||||||||| |||  ||||||||||||||||| |||||| | ||||| ||||||||||    
T  7926881 tgtctttttaatattaaagagtgtatttaatgcttcacaattttttatgagggtatatttg 7926941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 636 - 719
Target Start/End: Complemental strand, 34837237 - 34837152
Alignment:
Q  636 cccttatttaatg--tgtctttttaatcttatcgagtgtatttaatgctttacaattatgtatgatggtatatttggaaaaatatt 719  Q
    |||||||||||||  |||||||||||| |||  |  |||||| ||||||| |||||| | ||||| |||||||||| |||||||||    
T  34837237 cccttatttaatgcttgtctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgtaaaaatatt 34837152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 4837363 - 4837301
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  4837363 ttgactttattataaattaattacacaatttcaatgcattaattactatataatttccttttt 4837301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 668 - 709
Target Start/End: Original strand, 6688884 - 6688925
Alignment:
Q  668 agtgtatttaatgctttacaattatgtatgatggtatatttg 709  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  6688884 agtgtatttaatgctttacaattttttatgagggtatatttg 6688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 20553037 - 20552975
Alignment:
Q  502 ttgacttt-ttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||| |||| ||||||||||| |||||||||||| ||||||||   |||||||||||||    
T  20553037 ttgactttattatcaattaattacacaatttcaatgcattaattactatataatttccttttt 20552975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 15079039 - 15079100
Alignment:
Q  502 ttgactttttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||||||||| ||||||||||| ||||||||| || ||| ||||   |||||||||||||    
T  15079039 ttgactttttataaattaattacacaatttcaatacattaactactatataatttccttttt 15079100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 30217647 - 30217712
Alignment:
Q  505 actttttatgaattaattacataatttcaatgcaataattacttattaatttccttttttagtatc 570  Q
    |||||||||  ||| |||||| |||||||||||||||| ||||   |||||| |||||||||||||    
T  30217647 actttttatcgattgattacacaatttcaatgcaataaatactatataattttcttttttagtatc 30217712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 563
Target Start/End: Complemental strand, 39531929 - 39531868
Alignment:
Q  502 ttgactttttatgaattaattacataatttcaatgcaataattacttattaatttccttttt 563  Q
    |||||| ||||| ||||||||||| |||||||||||| ||| ||||   |||||||||||||    
T  39531929 ttgactctttataaattaattacacaatttcaatgcattaactactatataatttccttttt 39531868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University