View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_low_11 (Length: 286)
Name: NF8221_low_11
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 54221656 - 54221408
Alignment:
| Q |
21 |
gttacaagaaggaagacatgtataatatacaacaacacgatcattttgtgaaaggnnnnnnntctccctagtcaaaagactacaaaaagaggaaaacatc |
120 |
Q |
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| T |
54221656 |
gttacaagaaggaagacatgtataatatacaacaacacgatcattttgtgaaaggaaaaaaatctccctagtcaaaagactacaaaaagaggaaaacatc |
54221557 |
T |
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| Q |
121 |
aatgggaaaagaatagccatagcccaagcctcatagggtacaaattcttaagttaaattatcaagctcttcataagaatcaactcaagctcaactcttca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
54221556 |
aatgggaaaagaatagccatagcccaagcctcatagggtacaaattcttaagttaaattatccagctcttcataagaatcaactcaaactcatctcttca |
54221457 |
T |
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| Q |
221 |
tgtagatgccaattgcaaaagttcaatatttagttcaaatgtagctcca |
269 |
Q |
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| T |
54221456 |
tgtagatgccaattgcaaaagttcaatatttagttcaaatgtagctcca |
54221408 |
T |
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