View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8221_low_12 (Length: 275)
Name: NF8221_low_12
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_12 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 275
Target Start/End: Complemental strand, 4356196 - 4355946
Alignment:
| Q |
25 |
gtgttgccctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgta |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4356196 |
gtgttgccctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgta |
4356097 |
T |
|
| Q |
125 |
actgtaaacccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4356096 |
actgtaaacccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttca |
4355997 |
T |
|
| Q |
225 |
aataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4355996 |
aataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatc |
4355946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 275
Target Start/End: Original strand, 4674716 - 4674966
Alignment:
| Q |
25 |
gtgttgccctatttcctctaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgta |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4674716 |
gtgttgccctatttcctcgaccatcataaatctttcttcattcaaaccacaactataaactttttcttcagtagcaaaaaccaagatatctccatttgta |
4674815 |
T |
|
| Q |
125 |
actgtaaacccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4674816 |
actgtaaacccggtaacttgaggatttttctcttgtaatcctagtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttca |
4674915 |
T |
|
| Q |
225 |
aataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4674916 |
aataccaaacagtaaaaactgactttcttactttcaccaaacaaatagatc |
4674966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 270
Target Start/End: Complemental strand, 38249738 - 38249535
Alignment:
| Q |
67 |
caaaccacaactataaactttttcttcagtagcaaaaaccaagagatctccatttgtaactgtaaacccggtaacttgaggatttttctcttgtaatcct |
166 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||||||||| || ||||| || || |||| ||||||| |||| | ||||| |||||| | ||||| |
|
|
| T |
38249738 |
caaaccgcaactgtaaaccttttcttctgtagcaaaaattaaaagatcaccgttcataaccataaaccctctaacattaggatctttctccttcaatccc |
38249639 |
T |
|
| Q |
167 |
agtcctctcactctaactttcaacactttctgccatgaactcgactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaac |
266 |
Q |
| |
|
| | |||| ||||| |||||||| ||||| |||||||||| |||||||| ||||| ||| ||||| ||||||||| ||||| |||| ||||||||||| |
|
|
| T |
38249638 |
aatgctcttactctcactttcaatactttttgccatgaacctgactcatagtcttttaaaacccaaatagtaaaaacagacttacttaatttcaccaaac |
38249539 |
T |
|
| Q |
267 |
aaat |
270 |
Q |
| |
|
|||| |
|
|
| T |
38249538 |
aaat |
38249535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 12036924 - 12036860
Alignment:
| Q |
209 |
gactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaataga |
273 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| ||||| | ||||||| |||||||||||||||||| |
|
|
| T |
12036924 |
gactcatagtcttttaaaaaccaaacagtgaaaacaaaatttcttaatttcaccaaacaaataga |
12036860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 20657241 - 20657177
Alignment:
| Q |
209 |
gactcataatctttcaaataccaaacagtaaaaactgactttcttactttcaccaaacaaataga |
273 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| ||||| | ||||||| |||||||||||||||||| |
|
|
| T |
20657241 |
gactcatagtcttttaaaaaccaaacagtgaaaacataatttcttaatttcaccaaacaaataga |
20657177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University