View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_low_15 (Length: 241)
Name: NF8221_low_15
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_15 |
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| [»] chr8 (5 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 37375678 - 37375455
Alignment:
| Q |
18 |
acaagtagtagtgatgaaagtaagatagttgaaactgatcagaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375678 |
acaagtagtagtgatgaaagtaagatagttgaaactgatcagaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaat |
37375579 |
T |
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| Q |
118 |
catgtttcactgcaagaaagtcataaaatctttcaaaactactgcaaagcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37375578 |
catgtttcactgcaagaaagtcataaaatctttcaaaactactgcaaagcataggcagaactgtctatatattcttgtacatgataatgcaaatttaaat |
37375479 |
T |
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| Q |
218 |
taatacatgaatgtataatcaatc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
37375478 |
taatacatgaatgtataatcaatc |
37375455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 37383026 - 37382807
Alignment:
| Q |
18 |
acaagtagtagtgatgaaagtaagatagttgaaactgatcagaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaat |
117 |
Q |
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|||||| |||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||| | |
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| T |
37383026 |
acaagtggtagtgatgaaagtaagaaagtggaaactaa--agaatacctcagatacataggttatctcacttaaatccaagtcctctccaaacacacagt |
37382929 |
T |
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| Q |
118 |
catgtttcactgcaagaaagtcataaaatctttcaaaactactgcaaagcataggcagaactgtctatatattcttgtacatgacgatgcaaatttaaat |
217 |
Q |
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| T |
37382928 |
catgtttcactgcaagcaagtcataaaatctttcgatattactgtgaagcataggcaaaactg--tgtatattcttgtacatgataatgcaattccaaat |
37382831 |
T |
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| Q |
218 |
taatacatgaatgtataatcaatc |
241 |
Q |
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| T |
37382830 |
taatacatgaatgtataatcaatc |
37382807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 37360838 - 37360674
Alignment:
| Q |
23 |
tagtagtgatgaaagtaagatagttgaaactgatcagaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaatcatgt |
122 |
Q |
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| T |
37360838 |
tagtagagatgaaagtaagaaactggaaactga--agattacctcagatgcataggttatctcatttaaatccaagtcctcgccaaacacacagtcatgt |
37360741 |
T |
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| Q |
123 |
ttcactgcaa-gaaagtcataaaatctttcaaaactactgcaaagcataggcagaactgtctatata |
188 |
Q |
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| T |
37360740 |
ttcactgaaacaaaagtcataaaatcattcaaaattactgcaaagcataggcagaaccgtgtatata |
37360674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 37367224 - 37367388
Alignment:
| Q |
23 |
tagtagtgatgaaagtaagatagttgaaactgatcagaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaatcatgt |
122 |
Q |
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| T |
37367224 |
tagtagagatgaaagtaagaaactggaaactga--agattacctcagattcataggttatctcatttaaatccaagtcctcgccaaacacacagtcatgt |
37367321 |
T |
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| Q |
123 |
ttcactgcaa-gaaagtcataaaatctttcaaaactactgcaaagcataggcagaactgtctatata |
188 |
Q |
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||||||| || |||||||||||||| ||||||| |||||||||||||||||||||| || |||||| |
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| T |
37367322 |
ttcactgaaacaaaagtcataaaatcattcaaaattactgcaaagcataggcagaaccgtgtatata |
37367388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 37386636 - 37386564
Alignment:
| Q |
75 |
taggttatctcatttaaatcaaagttctcg---ccaaacacacaatcatgtttcactgcaagaaagtcataaa |
144 |
Q |
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||||||||||||||| |||| |||| ||| |||||||| || ||||||||||||||||||||| |||||| |
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| T |
37386636 |
taggttatctcattttaatccaagtcatcggtaccaaacacgcagtcatgtttcactgcaagaaaggcataaa |
37386564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 41229557 - 41229743
Alignment:
| Q |
58 |
agaatacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaatcatgtttcactgcaagaaagtcataaaatctttcaaaact |
157 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||| |||||||||| |||| | | |
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| T |
41229557 |
agaatacctcagatacataggttatctcgtttaaatcgaagttctcgccaaacacgcagtcgtgtttcactgcaagaaaggcataaaatctatcaatatt |
41229656 |
T |
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| Q |
158 |
act-gcaaagcataggcagaactgtct--atatattcttgtacatgacgatgcaaatttaaattaatacatgaatgtataatcaatc |
241 |
Q |
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| | |||||||||||| |||||| | ||||| ||| ||||||| |||||| | ||||||| |||||||||||||||||||| |
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| T |
41229657 |
agtaccaaagcataggcttaactgtgtacatatactctcctacatgataatgcaagtccaaattaacacatgaatgtataatcaatc |
41229743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 39244517 - 39244445
Alignment:
| Q |
61 |
atacctcagatacataggttatctcatttaaatcaaagttctcgccaaacacacaatcatgtttcactgcaag |
133 |
Q |
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||||||| ||||||||| |||| ||||||||||| |||| |||||||| ||||| ||||||||||||||||| |
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| T |
39244517 |
atacctctgatacatagcttatttcatttaaatctaagtcatcgccaaatacacagtcatgtttcactgcaag |
39244445 |
T |
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