View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8221_low_17 (Length: 227)
Name: NF8221_low_17
Description: NF8221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8221_low_17 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 103160 - 102967
Alignment:
| Q |
15 |
atgaatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattg |
114 |
Q |
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| T |
103160 |
atgaatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattg |
103061 |
T |
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| Q |
115 |
tcttgacctccatcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagcc |
208 |
Q |
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| T |
103060 |
tcttgaccgccatcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagcc |
102967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 162337 - 162147
Alignment:
| Q |
18 |
aatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtct |
117 |
Q |
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| T |
162337 |
aatggtagctaccgaaagccaagttttcccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtct |
162238 |
T |
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| Q |
118 |
tgacctccatcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagcc |
208 |
Q |
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| T |
162237 |
tgacctccatcaggtccttctccaagaatccgcatacatatatagttgagtgcagtacaaaacatggtactgtgaccctcaatttgtagcc |
162147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 13052048 - 13051869
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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| T |
13052048 |
taccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
13051949 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtag |
206 |
Q |
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| T |
13051948 |
tccggcccttctccaagaattctcaggcatatatagttcagtgcagtacaaaacatggtgctgtgaccctcaatgtgtag |
13051869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 208
Target Start/End: Original strand, 93227 - 93408
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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| T |
93227 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaacacgaatccagtgtcttgctctagcacaagcattgttttgaccgcca |
93326 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtagcc |
208 |
Q |
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| T |
93327 |
tcaggaccttgtccaagaatccgcatacatatgtagttgagtgcagtagaaaacatgatgctgtgaccctcaatgtgtagcc |
93408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 12138115 - 12138293
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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| T |
12138115 |
taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttgctcttgcacaagcattgtcttgacctcca |
12138214 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgta |
205 |
Q |
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| T |
12138215 |
ttaggcccttctccaagaattcgcatacatatataattgagtgtggtacaaaacatggtactatgaccctctatgtgta |
12138293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 5670850 - 5671029
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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||||||||||||| |||||||||||||||||| ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5670850 |
taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5670949 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtag |
206 |
Q |
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| T |
5670950 |
tttggaccttctccaagtattcgcatacatatgtagttgagtacagtacaaaacatgatattgtgaccctctacgtgtag |
5671029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 5692596 - 5692775
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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||||||||||||| ||||||||||||||||| ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5692596 |
taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5692695 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtag |
206 |
Q |
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| T |
5692696 |
tttggaccttctccaagtattcgcatgcatatgtagttgagtactgtacaaaacatgatactgtgaccctctacgtgtag |
5692775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 5722940 - 5723119
Alignment:
| Q |
27 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
126 |
Q |
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|||||||||||| ||||||||||||||| | ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5722940 |
taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5723039 |
T |
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| Q |
127 |
tcaggtccttctccgagaattcgcatacatatatagttaagtgcagtacaaaacatggtgctgtgaccctcaatgtgtag |
206 |
Q |
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| T |
5723040 |
tttggaccttctccaagtattcgcatgcatatgtagttaagtacggtacaaaacatgatactgtgaccctctacgtgtag |
5723119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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